Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   VQ573_RS02550 Genome accession   NZ_CP142095
Coordinates   587011..587526 (+) Length   171 a.a.
NCBI ID   WP_004924506.1    Uniprot ID   A0A140NIZ6
Organism   Providencia stuartii strain 41     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 582011..592526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VQ573_RS02530 (VQ573_02530) - 582250..582537 (-) 288 WP_014656874.1 type II toxin-antitoxin system RelE/ParE family toxin -
  VQ573_RS02535 (VQ573_02535) - 582534..582797 (-) 264 WP_004924521.1 type II toxin-antitoxin system ParD family antitoxin -
  VQ573_RS02540 (VQ573_02540) - 582876..583214 (-) 339 WP_004924517.1 hypothetical protein -
  VQ573_RS21255 - 583427..583537 (-) 111 WP_368913000.1 transposase domain-containing protein -
  VQ573_RS02545 (VQ573_02545) uvrA 583787..586621 (-) 2835 WP_014656873.1 excinuclease ABC subunit UvrA -
  VQ573_RS02550 (VQ573_02550) ssb 587011..587526 (+) 516 WP_004924506.1 single-stranded DNA-binding protein Machinery gene
  VQ573_RS02555 (VQ573_02555) - 588176..590275 (+) 2100 WP_004924500.1 RecQ family ATP-dependent DNA helicase -
  VQ573_RS02560 (VQ573_02560) - 590272..591621 (+) 1350 WP_014656872.1 DNA-processing protein DprA -
  VQ573_RS02565 (VQ573_02565) aarP 592112..592519 (-) 408 WP_325984455.1 HTH-type transcriptional activator AarP -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18371.35 Da        Isoelectric Point: 4.9567

>NTDB_id=921485 VQ573_RS02550 WP_004924506.1 587011..587526(+) (ssb) [Providencia stuartii strain 41]
MASRGVNKVILIGNLGQDPEIRYMPNGGAVANLTLATSESWRDKQTGEMREKTEWHRVVIFGKLAEVAGEYLKKGSQVYI
EGSLQTRKWQDQSGQDRYTTEVVVNIGGSMQMLGGRGGESSGQSQGGQSGWGQPQQPAAQQFSGGGAPARSPAPAPQSSE
PPMDFDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=921485 VQ573_RS02550 WP_004924506.1 587011..587526(+) (ssb) [Providencia stuartii strain 41]
ATGGCCAGCAGAGGCGTAAATAAAGTAATTCTTATCGGTAACTTAGGGCAAGATCCTGAAATCCGTTACATGCCTAACGG
TGGTGCTGTTGCAAACCTGACTCTGGCAACTTCTGAAAGCTGGCGCGATAAGCAAACTGGTGAAATGCGTGAGAAAACAG
AATGGCATCGTGTCGTGATTTTCGGCAAATTAGCTGAAGTTGCTGGTGAATATCTGAAAAAAGGTTCTCAAGTCTATATT
GAAGGTTCTTTGCAGACTCGCAAATGGCAAGACCAAAGTGGTCAAGACCGTTACACCACTGAAGTTGTGGTTAACATCGG
TGGCTCAATGCAAATGTTAGGCGGTCGTGGTGGCGAATCATCAGGCCAAAGCCAAGGTGGTCAAAGCGGTTGGGGTCAGC
CTCAGCAACCAGCGGCTCAGCAATTCAGTGGCGGCGGCGCCCCAGCGCGTTCACCAGCACCTGCGCCACAAAGCAGCGAA
CCACCAATGGACTTCGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A140NIZ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

70.33

100

0.749
  ssb Glaesserella parasuis strain SC1401

57.065

100

0.614
  ssb Neisseria gonorrhoeae MS11

48.603

100

0.509
  ssb Neisseria meningitidis MC58

47.514

100

0.503