Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   VQY98_RS21205 Genome accession   NZ_CP142070
Coordinates   4367302..4367838 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain GN4143     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4362302..4372838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VQY98_RS21185 (VQY98_21190) soxR 4364030..4364494 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  VQY98_RS21190 (VQY98_21195) soxS 4364580..4364903 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  VQY98_RS21195 (VQY98_21200) pdeC 4364906..4366492 (-) 1587 WP_000019536.1 c-di-GMP phosphodiesterase PdeC -
  VQY98_RS21200 (VQY98_21205) yjcB 4366922..4367203 (+) 282 WP_001295689.1 YjcB family protein -
  VQY98_RS21205 (VQY98_21210) ssb 4367302..4367838 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  VQY98_RS21210 (VQY98_21215) uvrA 4368092..4370914 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  VQY98_RS21215 (VQY98_21220) yjbR 4370949..4371305 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  VQY98_RS21220 (VQY98_21225) yjbQ 4371309..4371725 (-) 417 WP_000270372.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  VQY98_RS21225 (VQY98_21230) aphA 4371836..4372549 (-) 714 WP_001315956.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=921376 VQY98_RS21205 WP_000168305.1 4367302..4367838(-) (ssb) [Escherichia coli strain GN4143]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=921376 VQY98_RS21205 WP_000168305.1 4367302..4367838(-) (ssb) [Escherichia coli strain GN4143]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCACAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489