Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   VQY67_RS13055 Genome accession   NZ_CP142033
Coordinates   2869671..2870201 (+) Length   176 a.a.
NCBI ID   WP_122782083.1    Uniprot ID   -
Organism   Pseudomonas saxonica strain NCCB:25029     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2864671..2875201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VQY67_RS13040 (VQY67_13040) bfr 2864707..2865171 (+) 465 WP_122782086.1 bacterioferritin -
  VQY67_RS13045 (VQY67_13045) uvrA 2865238..2868072 (-) 2835 WP_122782085.1 excinuclease ABC subunit UvrA -
  VQY67_RS13050 (VQY67_13050) - 2868270..2869661 (+) 1392 WP_324829781.1 MFS transporter -
  VQY67_RS13055 (VQY67_13055) ssb 2869671..2870201 (+) 531 WP_122782083.1 single-stranded DNA-binding protein Machinery gene
  VQY67_RS13060 (VQY67_13060) - 2870334..2872773 (-) 2440 Protein_2551 membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family -
  VQY67_RS13065 (VQY67_13065) - 2873457..2874746 (+) 1290 WP_240890883.1 carbohydrate porin -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19768.90 Da        Isoelectric Point: 5.9314

>NTDB_id=921213 VQY67_RS13055 WP_122782083.1 2869671..2870201(+) (ssb) [Pseudomonas saxonica strain NCCB:25029]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDQQNQGGGNNYQQPQQSAPRQQAQRPAPQQQPQQQRQAPQQQA
PQPAPDFDSFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=921213 VQY67_RS13055 WP_122782083.1 2869671..2870201(+) (ssb) [Pseudomonas saxonica strain NCCB:25029]
ATGGCCCGTGGGGTTAACAAAGTTATATTGGTCGGCACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
TGCCGTGACCAACCTGAGTCTGGCAACCAGCGAACAGTGGACTGACAAGCAAACCGGCCAGAAAGTCGAAAAGACTGAGT
GGCACCGTGTATCGATGTTCGGCAAAGTCGCCGAAATTGCTGGCGAATACCTGCGCAAGGGTTCGCAGGTGTACATCGAA
GGCAAGCTGCAAACCCGTGAGTGGGAAAAAGACGGTATCAAGCGTTACACCACTGAAATCGTGGTCGACATGCAAGGCAC
CATGCAGCTGCTGGGTGGCCGTCCACAAGGCGACCAACAGAACCAGGGCGGCGGTAACAACTACCAGCAGCCACAGCAGT
CCGCTCCGCGTCAGCAGGCTCAACGCCCTGCACCGCAGCAGCAACCCCAGCAACAACGTCAAGCGCCGCAACAACAGGCT
CCACAGCCTGCTCCGGATTTCGACAGCTTCGATGACGATATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

59.777

100

0.608
  ssb Glaesserella parasuis strain SC1401

47.917

100

0.523
  ssb Neisseria gonorrhoeae MS11

48.333

100

0.494
  ssb Neisseria meningitidis MC58

47.778

100

0.489