Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   VOF86_RS24185 Genome accession   NZ_CP142026
Coordinates   5208795..5209352 (+) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain L3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5203795..5214352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VOF86_RS24165 (VOF86_24165) pilR 5205071..5206408 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  VOF86_RS24170 (VOF86_24170) thiO 5206454..5207548 (-) 1095 WP_003119424.1 glycine oxidase ThiO -
  VOF86_RS24175 (VOF86_24175) - 5207683..5208192 (+) 510 WP_003102595.1 GspH/FimT family pseudopilin -
  VOF86_RS24180 (VOF86_24180) - 5208298..5208804 (+) 507 WP_003102598.1 GspH/FimT family pseudopilin -
  VOF86_RS24185 (VOF86_24185) pilV 5208795..5209352 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  VOF86_RS24190 (VOF86_24190) pilW 5209349..5210173 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  VOF86_RS24195 (VOF86_24195) pilX 5210170..5210757 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  VOF86_RS24200 (VOF86_24200) pilY1 5210769..5214260 (+) 3492 WP_010793785.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=921172 VOF86_RS24185 WP_003119423.1 5208795..5209352(+) (pilV) [Pseudomonas aeruginosa strain L3]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=921172 VOF86_RS24185 WP_003119423.1 5208795..5209352(+) (pilV) [Pseudomonas aeruginosa strain L3]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995