Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AB1N71_RS23020 Genome accession   NZ_CP162406
Coordinates   4753896..4754432 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain PEC1021     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4748896..4759432
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1N71_RS23000 soxR 4750624..4751088 (-) 465 WP_000412424.1 redox-sensitive transcriptional activator SoxR -
  AB1N71_RS23005 soxS 4751174..4751497 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  AB1N71_RS23010 pdeC 4751500..4753086 (-) 1587 WP_001550430.1 c-di-GMP phosphodiesterase PdeC -
  AB1N71_RS23015 yjcB 4753516..4753797 (+) 282 WP_001295689.1 YjcB family protein -
  AB1N71_RS23020 ssb 4753896..4754432 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  AB1N71_RS23025 uvrA 4754687..4757509 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  AB1N71_RS23030 yjbR 4757544..4757900 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  AB1N71_RS23035 yjbQ 4757904..4758320 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  AB1N71_RS23040 aphA 4758431..4759144 (-) 714 WP_001226928.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=921132 AB1N71_RS23020 WP_000168305.1 4753896..4754432(-) (ssb) [Escherichia coli strain PEC1021]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=921132 AB1N71_RS23020 WP_000168305.1 4753896..4754432(-) (ssb) [Escherichia coli strain PEC1021]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCTGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGACAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
TGGCACCATGCAGATGTTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCTGCT
CCGGCAGCACCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489