Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   DGAOKPDK_RS17630 Genome accession   NZ_CP142019
Coordinates   3738774..3739592 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain EMB-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3733774..3744592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DGAOKPDK_RS17595 (VOI31_RS17605) - 3734357..3734486 (-) 130 Protein_3432 hypothetical protein -
  DGAOKPDK_RS17600 (VOI31_RS17610) rpoZ 3734525..3734803 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  DGAOKPDK_RS17605 (VOI31_RS17615) gmk 3734876..3735505 (-) 630 WP_000015937.1 guanylate kinase -
  DGAOKPDK_RS17610 (VOI31_RS17620) ispH 3735628..3736578 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  DGAOKPDK_RS17615 (VOI31_RS17625) fimU 3736748..3737221 (+) 474 WP_324641884.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  DGAOKPDK_RS17620 (VOI31_RS17630) pilV 3737215..3737775 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  DGAOKPDK_RS17625 (VOI31_RS17635) pilW 3737776..3738777 (+) 1002 WP_057050390.1 PilW family protein Machinery gene
  DGAOKPDK_RS17630 (VOI31_RS17640) pilX 3738774..3739592 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  DGAOKPDK_RS17635 (VOI31_RS17645) pilY1 3739604..3743458 (+) 3855 WP_272407595.1 PilC/PilY family type IV pilus protein Machinery gene
  DGAOKPDK_RS17640 (VOI31_RS17650) pilY2 3743471..3743953 (+) 483 WP_001046418.1 type IV pilin protein Machinery gene
  DGAOKPDK_RS17645 (VOI31_RS17655) pilE 3743950..3744375 (+) 426 WP_000788339.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=921086 DGAOKPDK_RS17630 WP_000149374.1 3738774..3739592(+) (pilX) [Acinetobacter baumannii strain EMB-1]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=921086 DGAOKPDK_RS17630 WP_000149374.1 3738774..3739592(+) (pilX) [Acinetobacter baumannii strain EMB-1]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCCAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993