Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   DGAOKPDK_RS17640 Genome accession   NZ_CP142019
Coordinates   3743471..3743953 (+) Length   160 a.a.
NCBI ID   WP_001046418.1    Uniprot ID   A0A0J8UYN7
Organism   Acinetobacter baumannii strain EMB-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3738471..3748953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DGAOKPDK_RS17630 (VOI31_RS17640) pilX 3738774..3739592 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  DGAOKPDK_RS17635 (VOI31_RS17645) pilY1 3739604..3743458 (+) 3855 WP_272407595.1 PilC/PilY family type IV pilus protein Machinery gene
  DGAOKPDK_RS17640 (VOI31_RS17650) pilY2 3743471..3743953 (+) 483 WP_001046418.1 type IV pilin protein Machinery gene
  DGAOKPDK_RS17645 (VOI31_RS17655) pilE 3743950..3744375 (+) 426 WP_000788339.1 type IV pilin protein Machinery gene
  DGAOKPDK_RS17650 (VOI31_RS17660) rpsP 3744522..3744773 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  DGAOKPDK_RS17655 (VOI31_RS17665) rimM 3744793..3745341 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  DGAOKPDK_RS17660 (VOI31_RS17670) trmD 3745387..3746127 (+) 741 WP_005109350.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  DGAOKPDK_RS17665 (VOI31_RS17675) rplS 3746335..3746703 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  DGAOKPDK_RS17670 (VOI31_RS17680) - 3746755..3747696 (-) 942 WP_085943440.1 lipase family alpha/beta hydrolase -
  DGAOKPDK_RS17675 (VOI31_RS17685) - 3747811..3748842 (-) 1032 WP_001189457.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17533.80 Da        Isoelectric Point: 8.4817

>NTDB_id=921088 DGAOKPDK_RS17640 WP_001046418.1 3743471..3743953(+) (pilY2) [Acinetobacter baumannii strain EMB-1]
MNKYSILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTTGNLLTNAAANGQTWVIKATTTDSRNFNFIAKNSGLRCQSLTVTAVDNDCGGTTTCNTCETNSEVWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=921088 DGAOKPDK_RS17640 WP_001046418.1 3743471..3743953(+) (pilY2) [Acinetobacter baumannii strain EMB-1]
ATGAATAAGTACTCTATTCTACGGTTCAATCAAGGGGTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTGCTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGCTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTGGAACAGCATAAATCAAGAAATTTTACTTATAGGGGGTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAGATTACTGATGATACGACGACAGGAAATTTATTGACGAATGCTGCTGCAAATGGGCAAAC
ATGGGTCATTAAAGCGACAACTACAGATTCAAGAAACTTTAATTTTATTGCTAAGAATTCAGGTTTGCGTTGTCAAAGTT
TAACAGTTACAGCCGTTGATAATGATTGTGGTGGTACGACTACTTGTAATACATGTGAAACGAACAGTGAGGTTTGGCAG
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J8UYN7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

95.625

100

0.956
  comE Acinetobacter baylyi ADP1

41.279

100

0.444