Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   DGAOKPDK_RS17615 Genome accession   NZ_CP142019
Coordinates   3736748..3737221 (+) Length   157 a.a.
NCBI ID   WP_324641884.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain EMB-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3731748..3742221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DGAOKPDK_RS17590 (VOI31_RS17600) - 3732212..3734317 (-) 2106 WP_001117590.1 RelA/SpoT family protein -
  DGAOKPDK_RS17595 (VOI31_RS17605) - 3734357..3734486 (-) 130 Protein_3432 hypothetical protein -
  DGAOKPDK_RS17600 (VOI31_RS17610) rpoZ 3734525..3734803 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  DGAOKPDK_RS17605 (VOI31_RS17615) gmk 3734876..3735505 (-) 630 WP_000015937.1 guanylate kinase -
  DGAOKPDK_RS17610 (VOI31_RS17620) ispH 3735628..3736578 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  DGAOKPDK_RS17615 (VOI31_RS17625) fimU 3736748..3737221 (+) 474 WP_324641884.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  DGAOKPDK_RS17620 (VOI31_RS17630) pilV 3737215..3737775 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  DGAOKPDK_RS17625 (VOI31_RS17635) pilW 3737776..3738777 (+) 1002 WP_057050390.1 PilW family protein Machinery gene
  DGAOKPDK_RS17630 (VOI31_RS17640) pilX 3738774..3739592 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16846.44 Da        Isoelectric Point: 8.5418

>NTDB_id=921083 DGAOKPDK_RS17615 WP_324641884.1 3736748..3737221(+) (fimU) [Acinetobacter baumannii strain EMB-1]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWHTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=921083 DGAOKPDK_RS17615 WP_324641884.1 3736748..3737221(+) (fimU) [Acinetobacter baumannii strain EMB-1]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTGGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCATACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

99.363

100

0.994