Detailed information NTG0921085

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AB1N71_RS05695
• Genome accession: NZ_CP162406
• Coordinates: 1185378..1186370 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain PEC1021
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1180378..1191370

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB1N71_RS05665	ispD	1180439..1181149 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
AB1N71_RS05670	ispF	1181149..1181628 (+)	480	WP_001521152.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AB1N71_RS05675	truD	1181625..1182674 (+)	1050	WP_000568924.1	tRNA pseudouridine(13) synthase TruD	-
AB1N71_RS05680	surE	1182655..1183416 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
AB1N71_RS05685	pcm	1183410..1184036 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
AB1N71_RS05690	nlpD	1184221..1185315 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
AB1N71_RS05695	rpoS	1185378..1186370 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
AB1N71_RS05700	-	1186491..1186898 (-)	408	WP_001521151.1	MarR family winged helix-turn-helix transcriptional regulator	-
AB1N71_RS05705	-	1187045..1187638 (+)	594	WP_001521150.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
AB1N71_RS05710	-	1187638..1189065 (+)	1428	WP_000863205.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
AB1N71_RS05715	-	1189076..1189312 (+)	237	WP_000562982.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
AB1N71_RS05720	ygbN	1189351..1190715 (-)	1365	WP_000104455.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=921085 AB1N71_RS05695 WP_000081550.1 1185378..1186370(+) (rpoS) [Escherichia coli strain PEC1021]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=921085 AB1N71_RS05695 WP_000081550.1 1185378..1186370(+) (rpoS) [Escherichia coli strain PEC1021]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCCCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGCGAGTTGTCCCA
TAAACTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715