Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DGAOKPDK_RS16990 Genome accession   NZ_CP142019
Coordinates   3612862..3613443 (+) Length   193 a.a.
NCBI ID   WP_001215082.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain EMB-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3607862..3618443
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DGAOKPDK_RS16965 (VOI31_RS16975) - 3608483..3608836 (+) 354 WP_000580165.1 DUF1304 domain-containing protein -
  DGAOKPDK_RS16970 (VOI31_RS16980) - 3608889..3609230 (+) 342 WP_000263327.1 GlpM family protein -
  DGAOKPDK_RS16975 (VOI31_RS16985) tenA 3609280..3609954 (-) 675 WP_000899418.1 thiaminase II -
  DGAOKPDK_RS16980 (VOI31_RS16990) - 3610217..3611299 (+) 1083 WP_000680210.1 DUF475 domain-containing protein -
  DGAOKPDK_RS16985 (VOI31_RS16995) - 3611446..3612810 (+) 1365 WP_000980462.1 MFS transporter -
  DGAOKPDK_RS16990 (VOI31_RS17000) ssb 3612862..3613443 (+) 582 WP_001215082.1 single-stranded DNA-binding protein Machinery gene
  DGAOKPDK_RS16995 (VOI31_RS17005) - 3613483..3613806 (-) 324 WP_002117414.1 AzlD domain-containing protein -
  DGAOKPDK_RS17000 (VOI31_RS17010) - 3613803..3614498 (-) 696 WP_324643624.1 AzlC family ABC transporter permease -
  DGAOKPDK_RS17005 (VOI31_RS17015) - 3614567..3615115 (+) 549 WP_000081859.1 helix-turn-helix domain-containing protein -
  DGAOKPDK_RS17010 (VOI31_RS17020) - 3615421..3616863 (+) 1443 WP_000718864.1 amino acid permease -
  DGAOKPDK_RS17015 (VOI31_RS17025) - 3616925..3618424 (-) 1500 WP_001257162.1 PLP-dependent aminotransferase family protein -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 20965.80 Da        Isoelectric Point: 6.4822

>NTDB_id=921077 DGAOKPDK_RS16990 WP_001215082.1 3612862..3613443(+) (ssb) [Acinetobacter baumannii strain EMB-1]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEVWTDKNTGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGGNDFNQPRFNAPQQGGGYQNNNQGGGYGQNTGGYGGQGGF
GNGGNSPQGGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 582 bp        

>NTDB_id=921077 DGAOKPDK_RS16990 WP_001215082.1 3612862..3613443(+) (ssb) [Acinetobacter baumannii strain EMB-1]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTC
GTTGACCCAGTTTTCTATCGCAACAAGTGAAGTTTGGACCGATAAAAATACAGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTTTTACGTAAAGGTTCTAAAGTTTATATCGAAGGT
TCATTACGTACACGTCAGTGGACAGACCAAAATGGTCAAGAACGTTACACTACAGAAATCCGTGGCGACCAGATGCAAAT
GTTAGATGCTCGTCAACAAGGTGAACAAGGTTTTGCTGGCGGTAATGATTTTAACCAACCACGTTTTAACGCGCCTCAAC
AAGGTGGCGGCTATCAAAATAACAACCAAGGTGGTGGCTACGGCCAAAACACTGGTGGTTATGGTGGCCAAGGTGGTTTC
GGTAATGGTGGCAATAGCCCACAAGGTGGTGGTTTTGCCCCTAAAGCACCACAACAACCAGCATCTGCACCAGCTGATTT
AGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.485

100

0.539
  ssb Vibrio cholerae strain A1552

44.221

100

0.456
  ssb Neisseria meningitidis MC58

38.579

100

0.394
  ssb Neisseria gonorrhoeae MS11

38.579

100

0.394