Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   DGAOKPDK_RS14790 Genome accession   NZ_CP142019
Coordinates   3139051..3140181 (+) Length   376 a.a.
NCBI ID   WP_324641784.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain EMB-1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3134051..3145181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DGAOKPDK_RS14765 (VOI31_RS14765) - 3134311..3134517 (-) 207 WP_000182542.1 hypothetical protein -
  DGAOKPDK_RS14770 (VOI31_RS14770) - 3134571..3136685 (-) 2115 WP_324641782.1 TonB-dependent copper receptor -
  DGAOKPDK_RS14775 (VOI31_RS14775) - 3136758..3137186 (-) 429 WP_324641783.1 DUF2946 family protein -
  DGAOKPDK_RS14780 (VOI31_RS14780) def 3137223..3137753 (-) 531 WP_001196539.1 peptide deformylase -
  DGAOKPDK_RS14785 (VOI31_RS14785) tsaP 3137876..3139030 (+) 1155 WP_272374525.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  DGAOKPDK_RS14790 (VOI31_RS14790) dprA 3139051..3140181 (+) 1131 WP_324641784.1 DNA-processing protein DprA Machinery gene
  DGAOKPDK_RS14795 (VOI31_RS14795) - 3140232..3140801 (+) 570 WP_000633612.1 L-threonylcarbamoyladenylate synthase -
  DGAOKPDK_RS14800 (VOI31_RS14800) - 3141193..3142113 (-) 921 WP_000084546.1 DMT family transporter -
  DGAOKPDK_RS14805 (VOI31_RS14805) - 3142219..3142869 (-) 651 WP_001984979.1 TetR/AcrR family transcriptional regulator -
  DGAOKPDK_RS14810 (VOI31_RS14810) - 3143006..3144220 (+) 1215 WP_000372838.1 MFS transporter -
  DGAOKPDK_RS14815 (VOI31_RS14815) - 3144242..3145006 (+) 765 WP_058061543.1 AraC family transcriptional regulator -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 41944.46 Da        Isoelectric Point: 6.5418

>NTDB_id=921074 DGAOKPDK_RS14790 WP_324641784.1 3139051..3140181(+) (dprA) [Acinetobacter baumannii strain EMB-1]
MLTQLSSHHYHTLKVWYLVQHSLVSFKKIIDYFGNCEKATQPDGLAKWSSLGLHANHLKRVNEFQTTQGQAQFEQLVQQV
RQHTDFILTPDDSGYPTQLLPYTDHPPIIFGKGQAQALLQPQIAIVGSRKPSPHGRQVAYDFAYYLSEKGFFISSGLAYG
IDEAAHQGASAHQRTIAVTGTGLDTTYPAQNKKLAEYILAQNGAIITEFLPGTPPLQQHFPRRNRIVSGLSLGVLVVEAT
LKSGSLITANKAAEQGKTVFAIPGHIYSEFHQGCHQLIREGAILIDHPEQIIEDLALPTQWQSQQQNQTEETNTNTPEIP
EHLIDLYQSLDWVGQNIDQLVVHHNIPVSELTSSLMELELLGLCMQQSGLYLRCRS

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=921074 DGAOKPDK_RS14790 WP_324641784.1 3139051..3140181(+) (dprA) [Acinetobacter baumannii strain EMB-1]
ATGCTCACTCAACTTTCTTCACACCACTACCACACACTTAAAGTGTGGTATTTGGTGCAGCACTCTTTAGTCAGCTTTAA
AAAAATTATTGATTATTTTGGAAATTGTGAAAAAGCCACTCAACCTGATGGTTTAGCAAAGTGGTCCTCTCTGGGGCTAC
ATGCTAATCACTTAAAGCGTGTAAACGAATTTCAAACGACCCAAGGTCAGGCGCAGTTTGAACAACTTGTACAACAAGTT
CGTCAGCATACGGATTTTATTTTAACGCCAGATGACTCTGGCTATCCTACTCAATTACTTCCTTATACAGATCACCCACC
TATTATTTTTGGGAAAGGTCAAGCGCAAGCTTTATTGCAACCTCAAATTGCGATTGTCGGTAGCCGAAAACCAAGCCCAC
ATGGACGACAGGTCGCTTATGATTTTGCCTATTACTTAAGTGAAAAGGGCTTTTTCATTAGTAGCGGTCTGGCTTATGGC
ATTGATGAAGCCGCTCATCAAGGTGCATCTGCTCATCAACGTACCATTGCAGTGACGGGTACTGGCTTAGACACTACTTA
TCCAGCTCAAAATAAAAAACTTGCAGAATATATTTTGGCTCAAAACGGCGCCATTATTACTGAGTTTTTACCGGGTACAC
CGCCATTACAACAGCATTTTCCACGTAGAAACCGAATTGTCAGCGGTTTGAGTTTAGGCGTTTTGGTGGTAGAAGCGACA
TTAAAAAGTGGCTCACTCATCACGGCCAATAAAGCTGCTGAACAAGGTAAAACCGTATTCGCGATTCCGGGCCATATTTA
TAGCGAGTTTCATCAAGGATGCCATCAACTTATCCGTGAAGGTGCAATTTTAATCGACCATCCTGAACAGATTATTGAGG
ATCTTGCTTTACCCACTCAATGGCAAAGTCAGCAACAAAATCAAACTGAAGAAACTAATACGAATACTCCAGAAATTCCT
GAGCATTTGATTGACCTTTATCAGTCTTTAGACTGGGTGGGACAAAATATTGACCAGCTTGTAGTTCACCATAATATTCC
AGTTTCTGAACTGACCTCTTCACTAATGGAACTAGAACTACTCGGTTTATGTATGCAACAATCAGGGCTGTATTTACGTT
GTCGTTCTTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(331-369)

DNA recombination-mediator protein A (DNA_processg_A)

(87-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii D1279779

99.468

100

0.995
  dprA Acinetobacter baumannii strain A118

98.67

100

0.987
  dprA Acinetobacter baylyi ADP1

70.341

100

0.713
  dprA Vibrio cholerae strain A1552

43.807

88.032

0.386