Detailed information NTG0921057

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: DGAOKPDK_RS11580
• Genome accession: NZ_CP142019
• Coordinates: 2462627..2463745 (+)
• Length: 372 a.a.
• NCBI ID: WP_000347037.1
• Uniprot ID: -
• Organism: Acinetobacter baumannii strain EMB-1
• Function: mediate the depolymerization of the type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2457627..2468745

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DGAOKPDK_RS11570 (VOI31_RS11565)	-	2460743..2461435 (-)	693	WP_324641704.1	YggS family pyridoxal phosphate-dependent enzyme	-
DGAOKPDK_RS11575 (VOI31_RS11570)	pilT	2461562..2462599 (+)	1038	WP_000355489.1	type IV pilus twitching motility protein PilT	Machinery gene
DGAOKPDK_RS11580 (VOI31_RS11575)	pilU	2462627..2463745 (+)	1119	WP_000347037.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
DGAOKPDK_RS11585 (VOI31_RS11580)	fur	2463815..2464252 (-)	438	WP_001122847.1	ferric iron uptake transcriptional regulator	-
DGAOKPDK_RS11590 (VOI31_RS11585)	-	2464364..2464762 (+)	399	WP_001170994.1	outer membrane protein assembly factor BamE	-
DGAOKPDK_RS11595 (VOI31_RS11590)	-	2464817..2465140 (-)	324	WP_000442589.1	RnfH family protein	-
DGAOKPDK_RS11600 (VOI31_RS11595)	-	2465140..2466207 (-)	1068	WP_029777564.1	membrane protein	-
DGAOKPDK_RS11605 (VOI31_RS11600)	-	2466360..2466815 (-)	456	WP_000782976.1	bacteriohemerythrin	-
DGAOKPDK_RS11610 (VOI31_RS11605)	-	2467068..2467916 (-)	849	WP_000336551.1	class II glutamine amidotransferase	-

Sequence

Protein

• Length: 372 a.a.
• Molecular weight: 41919.10 Da
• Isoelectric Point: 6.6943

>NTDB_id=921057 DGAOKPDK_RS11580 WP_000347037.1 2462627..2463745(+) (pilU) [Acinetobacter baumannii strain EMB-1]
MDFNDLLNLMVEKKSSDLFITDGVAPSMKINGQIVPISKNSLSGEVIGQLLHSIMSEKQRREFADTRECNFAIMNREKTA
RFRVSAFQQRDMPGMVLRRIETKIPSIDDLQLPPVLKDLSMTKRGIIIFVGATGTGKSTSLASMISHRNHNSKGHIITIE
DPIEFIHEHAGCIITQREVGIDTDSFEIALKNTLRQAPDVILIGEIRSREVMDYAIGFAETGHLVLATMHANNANQALDR
IIHFFESDRHSQLYMDLSLNLKAMIAQQLIPTPDGNSRRAAIEILINSPLISDYIRKGEIHEIKDLMKRSRELGMQTFDQ
ALFDLYKAGQITYKDALKHADSPNDLRLTIKLADEGPDQLSDGKQHLTFDRQ

Nucleotide

• Length: 1119 bp

>NTDB_id=921057 DGAOKPDK_RS11580 WP_000347037.1 2462627..2463745(+) (pilU) [Acinetobacter baumannii strain EMB-1]
ATGGATTTTAATGACCTGCTCAACCTGATGGTTGAAAAGAAATCTTCCGATCTCTTTATTACAGATGGCGTTGCGCCCTC
TATGAAGATTAATGGGCAAATTGTTCCAATTTCAAAAAACAGTCTTTCTGGGGAAGTGATTGGTCAACTGTTACATTCCA
TCATGAGTGAAAAACAACGCAGAGAATTTGCAGACACTCGTGAATGTAACTTTGCCATTATGAACCGTGAAAAAACGGCG
CGTTTTCGTGTCAGTGCTTTTCAGCAGCGCGACATGCCGGGCATGGTACTACGTCGTATTGAAACCAAGATTCCTTCAAT
TGATGACTTGCAGTTACCGCCTGTACTTAAAGATTTATCGATGACTAAACGCGGCATTATTATTTTCGTAGGCGCGACAG
GTACAGGTAAATCCACTTCATTGGCTTCAATGATCAGCCATCGTAACCATAACTCTAAGGGCCATATCATTACCATTGAA
GACCCGATTGAGTTTATTCACGAACATGCAGGTTGCATCATTACTCAGCGTGAAGTCGGGATCGATACCGACTCATTTGA
AATTGCCTTGAAAAATACACTACGACAAGCGCCGGATGTGATCTTAATTGGTGAGATCCGTTCTCGTGAAGTCATGGACT
ATGCGATTGGCTTTGCTGAAACAGGCCATCTTGTATTAGCTACCATGCACGCTAACAACGCCAACCAAGCGCTCGACCGT
ATTATTCACTTTTTTGAAAGTGACCGTCATAGTCAGCTTTACATGGACTTGTCACTTAACTTAAAGGCAATGATTGCGCA
GCAGCTCATTCCAACACCAGATGGTAATTCACGCCGTGCAGCAATTGAGATTTTAATTAACTCACCATTAATTTCAGACT
ACATCCGTAAAGGTGAAATTCATGAAATTAAAGATTTGATGAAACGCTCACGTGAACTTGGTATGCAGACCTTTGACCAA
GCTTTATTTGATTTATATAAAGCTGGTCAAATTACCTACAAAGATGCACTTAAACATGCTGACTCACCGAACGATTTACG
TTTAACCATTAAACTTGCAGATGAAGGTCCTGATCAATTATCAGACGGGAAACAGCATTTAACTTTTGACCGCCAGTAA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (32-270)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Acinetobacter baylyi ADP1	75.661	100	0.769
pilU	Pseudomonas stutzeri DSM 10701	69.293	98.925	0.685
pilU	Vibrio cholerae strain A1552	53.243	99.462	0.53
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	42.197	93.011	0.392