Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   VOI49_RS10080 Genome accession   NZ_CP142018
Coordinates   2009448..2010161 (+) Length   237 a.a.
NCBI ID   WP_226313880.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain lu24     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2004448..2015161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VOI49_RS10070 treC 2005519..2007147 (-) 1629 WP_226313878.1 alpha,alpha-phosphotrehalase -
  VOI49_RS10075 treP 2007214..2009237 (-) 2024 Protein_1929 PTS system trehalose-specific EIIBC component -
  VOI49_RS10080 treR 2009448..2010161 (+) 714 WP_226313880.1 trehalose operon repressor Regulator
  VOI49_RS10085 - 2010443..2010780 (-) 338 Protein_1931 winged helix-turn-helix transcriptional regulator -
  VOI49_RS10090 - 2010966..2011818 (+) 853 Protein_1932 VOC family protein -
  VOI49_RS10095 yaaA 2011860..2012591 (+) 732 WP_115245524.1 peroxide stress protein YaaA -
  VOI49_RS10100 nrdG 2012763..2013377 (-) 615 WP_226313881.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  VOI49_RS10105 - 2013381..2013884 (-) 504 WP_003053091.1 GNAT family N-acetyltransferase -
  VOI49_RS10110 - 2013893..2014827 (-) 935 Protein_1936 Gfo/Idh/MocA family protein -
  VOI49_RS10115 - 2014856..2015002 (-) 147 WP_226313882.1 hypothetical protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27591.79 Da        Isoelectric Point: 9.6147

>NTDB_id=921041 VOI49_RS10080 WP_226313880.1 2009448..2010161(+) (treR) [Streptococcus dysgalactiae strain lu24]
MTKYERIYKDLETKINKDFYKEGDFLPTEIELSQQYQASRDTVRKALSLLTKAGLILKKQGRGTQVIKQHQIMFPISELT
SYQELVSYSNLDSKTNVIAIDKLIVDETLSKLTGFSKNSLVWRVTRQRVVEGVASVLDIDYLSKTLVPIMKREIAEHSIY
QYLEKELHLAIDFALKEVTIDQITDHDKILLDLGSDQHVVSVKSKVYLSNNNQFQFTESRHKLEKFKFLDFARRRPK

Nucleotide


Download         Length: 714 bp        

>NTDB_id=921041 VOI49_RS10080 WP_226313880.1 2009448..2010161(+) (treR) [Streptococcus dysgalactiae strain lu24]
ATGACAAAGTATGAACGTATTTATAAAGACCTCGAAACAAAAATCAACAAAGACTTTTACAAAGAAGGGGATTTTTTACC
TACTGAAATAGAATTGAGTCAACAGTACCAAGCTAGCCGAGATACCGTCCGCAAGGCTCTCTCGCTTCTCACCAAGGCAG
GCCTTATCCTCAAAAAACAAGGACGTGGCACCCAAGTGATTAAGCAGCATCAGATCATGTTCCCCATCTCAGAACTAACT
AGTTATCAGGAACTCGTCTCTTACTCAAATCTAGATTCTAAGACCAACGTCATTGCCATTGATAAACTGATTGTGGATGA
GACACTTTCAAAATTGACCGGTTTTAGCAAAAACAGTTTGGTCTGGCGTGTTACGCGCCAACGCGTTGTTGAGGGTGTGG
CTTCCGTCTTAGACATTGATTACCTTAGTAAAACTTTGGTGCCAATAATGAAAAGGGAAATCGCAGAGCATTCTATTTAT
CAATATCTGGAAAAGGAACTCCATCTCGCCATTGACTTTGCCCTCAAAGAGGTTACCATTGACCAAATAACCGATCATGA
TAAAATTTTACTTGACCTTGGATCAGACCAACATGTTGTTTCCGTCAAATCCAAAGTCTACCTTTCCAATAATAACCAAT
TCCAATTCACCGAGAGTCGCCATAAACTGGAAAAATTTAAATTTTTAGATTTTGCTCGGCGCAGACCAAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(91-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

68.376

98.734

0.675