Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/nlmT   Type   Regulator
Locus tag   VIX88_RS12835 Genome accession   NZ_CP142016
Coordinates   1268694..1268816 (+) Length   40 a.a.
NCBI ID   WP_410896913.1    Uniprot ID   -
Organism   Riemerella anatipestifer strain 59RAST107     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1263694..1273816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VIX88_RS06270 (VIX88_06270) - 1264631..1265158 (+) 528 WP_324711522.1 hypothetical protein -
  VIX88_RS06275 (VIX88_06275) - 1265208..1266950 (+) 1743 WP_250206839.1 outer membrane beta-barrel protein -
  VIX88_RS06280 (VIX88_06280) - 1267034..1267243 (+) 210 WP_064969527.1 hypothetical protein -
  VIX88_RS06285 (VIX88_06285) - 1267337..1268638 (+) 1302 WP_064969528.1 radical SAM/SPASM domain-containing protein -
  VIX88_RS12835 comA/nlmT 1268694..1268816 (+) 123 WP_410896913.1 cysteine peptidase family C39 domain-containing protein Regulator
  VIX88_RS06290 (VIX88_06290) - 1268872..1269555 (+) 684 Protein_1242 TraM recognition domain-containing protein -
  VIX88_RS06295 (VIX88_06295) - 1269751..1272102 (+) 2352 WP_274095730.1 outer membrane beta-barrel family protein -
  VIX88_RS06300 (VIX88_06300) - 1272184..1272375 (+) 192 WP_064969532.1 hypothetical protein -
  VIX88_RS06305 (VIX88_06305) - 1272422..1273789 (+) 1368 WP_064969533.1 radical SAM/SPASM domain-containing protein -

Sequence

Protein


Download         Length: 40 a.a.        Molecular weight: 4599.41 Da        Isoelectric Point: 9.8673

>NTDB_id=920988 VIX88_RS12835 WP_410896913.1 1268694..1268816(+) (comA/nlmT) [Riemerella anatipestifer strain 59RAST107]
MIAKYYGKKYPIEYLRENTFITREGVSLLGISEAAKKIGF

Nucleotide


Download         Length: 123 bp        

>NTDB_id=920988 VIX88_RS12835 WP_410896913.1 1268694..1268816(+) (comA/nlmT) [Riemerella anatipestifer strain 59RAST107]
ATGATAGCAAAATATTACGGCAAGAAATACCCAATAGAATACCTCAGAGAAAATACCTTTATCACCCGTGAAGGTGTTTC
GCTTTTGGGTATTAGTGAAGCTGCCAAAAAGATAGGATTTTGA

Domains

Predicted by InterproScan.

Peptidase C39 family (Peptidase_C39)

(1-40)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/nlmT Streptococcus mutans UA159

53.846

97.5

0.525
  comA Streptococcus mitis SK321

40

100

0.4
  comA Streptococcus mitis NCTC 12261

40

100

0.4
  comA Streptococcus pneumoniae TIGR4

40

100

0.4
  comA Streptococcus pneumoniae Rx1

40

100

0.4
  comA Streptococcus pneumoniae D39

40

100

0.4
  comA Streptococcus pneumoniae R6

40

100

0.4