Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   VFH86_RS11540 Genome accession   NZ_CP142014
Coordinates   2570933..2571577 (+) Length   214 a.a.
NCBI ID   WP_001188318.1    Uniprot ID   A0A085QXE6
Organism   Vibrio cholerae strain LK-18     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2565933..2576577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VFH86_RS11525 (VFH86_11525) - 2566520..2567959 (-) 1440 WP_345657601.1 PilN domain-containing protein -
  VFH86_RS11530 (VFH86_11530) csrD 2567972..2569984 (-) 2013 WP_002154885.1 RNase E specificity factor CsrD -
  VFH86_RS11535 (VFH86_11535) ssb 2570108..2570641 (-) 534 WP_000168287.1 single-stranded DNA-binding protein Machinery gene
  VFH86_RS11540 (VFH86_11540) qstR 2570933..2571577 (+) 645 WP_001188318.1 LuxR C-terminal-related transcriptional regulator Regulator
  VFH86_RS11545 (VFH86_11545) galU 2571750..2572622 (+) 873 WP_001920788.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  VFH86_RS11550 (VFH86_11550) uvrA 2572778..2575600 (+) 2823 WP_114709997.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24722.55 Da        Isoelectric Point: 9.6461

>NTDB_id=920953 VFH86_RS11540 WP_001188318.1 2570933..2571577(+) (qstR) [Vibrio cholerae strain LK-18]
MQRANYARTIYLLTTQPKTLHPGVQAAIEQLNLPVPVIEPERLLREYQSDKHKILLLDHAENGLIRQQLGPLKLTSPYFE
TILFNVEKRLRTEDLLTFGNLKGLFYANEDTGFIAHGLGEIINGQNWLPRHVSSQLLHYYRYAFQSHQVQATVDLTAREI
QILRCLQTGASNMQIAENLFISEFTVKSHLYQIFKKLNVKNRVKAIAWVNQNLL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=920953 VFH86_RS11540 WP_001188318.1 2570933..2571577(+) (qstR) [Vibrio cholerae strain LK-18]
ATGCAACGAGCCAACTATGCACGCACGATTTATTTATTAACGACACAGCCGAAAACGTTACATCCCGGAGTTCAAGCCGC
CATTGAGCAATTGAACCTGCCCGTCCCGGTGATTGAACCAGAACGCTTATTGCGCGAGTATCAATCCGATAAACACAAAA
TATTGTTGCTCGACCATGCGGAAAATGGCCTGATTCGCCAGCAATTGGGTCCCCTCAAGCTTACCAGCCCGTACTTCGAA
ACCATCTTGTTTAATGTCGAGAAACGGTTAAGAACGGAAGATCTGCTCACTTTTGGCAACCTCAAAGGTCTGTTTTATGC
CAATGAAGACACAGGCTTTATTGCCCACGGTCTTGGGGAGATCATTAATGGCCAAAACTGGCTACCTCGCCATGTCAGCA
GTCAGTTGCTGCATTACTATCGTTACGCTTTCCAAAGCCATCAAGTTCAAGCCACTGTCGATTTGACTGCACGTGAAATT
CAGATCCTGCGCTGTTTACAAACTGGCGCATCGAATATGCAAATCGCTGAGAATTTATTTATTAGTGAGTTCACGGTGAA
ATCGCATCTTTATCAGATATTTAAAAAGCTAAACGTGAAAAATCGAGTCAAAGCGATCGCTTGGGTTAATCAAAATTTAC
TGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085QXE6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

98.598

100

0.986
  qstR Vibrio campbellii strain DS40M4

52.336

100

0.523
  qstR Vibrio parahaemolyticus RIMD 2210633

51.628

100

0.519