Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   VFH86_RS11535 Genome accession   NZ_CP142014
Coordinates   2570108..2570641 (-) Length   177 a.a.
NCBI ID   WP_000168287.1    Uniprot ID   A0A2A1YRC3
Organism   Vibrio cholerae strain LK-18     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2565108..2575641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VFH86_RS11515 (VFH86_11515) - 2565563..2565880 (-) 318 WP_000252812.1 MSHA biogenesis protein MshK -
  VFH86_RS11520 (VFH86_11520) gspM 2565873..2566523 (-) 651 WP_345657599.1 type II secretion system protein GspM -
  VFH86_RS11525 (VFH86_11525) - 2566520..2567959 (-) 1440 WP_345657601.1 PilN domain-containing protein -
  VFH86_RS11530 (VFH86_11530) csrD 2567972..2569984 (-) 2013 WP_002154885.1 RNase E specificity factor CsrD -
  VFH86_RS11535 (VFH86_11535) ssb 2570108..2570641 (-) 534 WP_000168287.1 single-stranded DNA-binding protein Machinery gene
  VFH86_RS11540 (VFH86_11540) qstR 2570933..2571577 (+) 645 WP_001188318.1 LuxR C-terminal-related transcriptional regulator Regulator
  VFH86_RS11545 (VFH86_11545) galU 2571750..2572622 (+) 873 WP_001920788.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  VFH86_RS11550 (VFH86_11550) uvrA 2572778..2575600 (+) 2823 WP_114709997.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19644.85 Da        Isoelectric Point: 5.7626

>NTDB_id=920952 VFH86_RS11535 WP_000168287.1 2570108..2570641(-) (ssb) [Vibrio cholerae strain LK-18]
MASRGVNKVILIGNLGQDPEVRYMPSGGAVANITIATSETWRDKATGEQKEKTEWHRVTLYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGYNGIMQMLGGRAQQGGMPAQGGMNAPAQQGSWGQPQQPAKQHQPMQQSAPQQYS
QPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=920952 VFH86_RS11535 WP_000168287.1 2570108..2570641(-) (ssb) [Vibrio cholerae strain LK-18]
ATGGCAAGCCGTGGCGTGAACAAAGTAATTTTGATTGGTAACTTAGGCCAAGATCCTGAAGTGCGTTATATGCCAAGCGG
CGGCGCAGTAGCGAATATCACCATCGCGACCTCCGAAACCTGGCGTGATAAAGCCACAGGTGAACAGAAGGAAAAAACCG
AATGGCACCGAGTCACTCTGTATGGAAAATTGGCAGAAGTGGCCGGTGAATATTTGCGTAAAGGTTCTCAAGTTTACATT
GAAGGCCAACTGCAAACGCGTAAGTGGCAAGATCAAAGTGGTCAAGATCGCTACTCAACCGAAGTGGTTGTACAAGGCTA
TAACGGTATCATGCAGATGCTGGGTGGACGTGCACAGCAAGGTGGAATGCCAGCCCAAGGCGGCATGAATGCTCCTGCGC
AGCAAGGAAGTTGGGGACAACCACAACAACCGGCGAAGCAGCATCAGCCTATGCAACAATCTGCGCCTCAACAGTACTCG
CAACCGCAGTATAATGAGCCGCCGATGGATTTTGATGACGACATCCCGTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A1YRC3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

99.435

100

0.994
  ssb Glaesserella parasuis strain SC1401

52.198

100

0.537
  ssb Neisseria meningitidis MC58

47.778

100

0.486
  ssb Neisseria gonorrhoeae MS11

47.778

100

0.486