Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AB3W22_RS03610 Genome accession   NZ_CP162335
Coordinates   755015..755512 (+) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas aeruginosa strain 1001d0_1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 750015..760512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3W22_RS03595 (AB3W22_03595) bfr 750024..750488 (+) 465 WP_003093668.1 bacterioferritin -
  AB3W22_RS03600 (AB3W22_03600) uvrA 750559..753396 (-) 2838 WP_003118151.1 excinuclease ABC subunit UvrA Machinery gene
  AB3W22_RS03605 (AB3W22_03605) - 753610..754998 (+) 1389 WP_003103910.1 MFS transporter -
  AB3W22_RS03610 (AB3W22_03610) ssb 755015..755512 (+) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  AB3W22_RS03615 (AB3W22_03615) pchA 755601..757031 (-) 1431 WP_003114686.1 isochorismate synthase PchA -
  AB3W22_RS03620 (AB3W22_03620) pchB 757028..757333 (-) 306 WP_003106950.1 isochorismate lyase PchB -
  AB3W22_RS03625 (AB3W22_03625) pchC 757333..758088 (-) 756 WP_031685258.1 pyochelin biosynthesis editing thioesterase PchC -
  AB3W22_RS03630 (AB3W22_03630) pchD 758085..759728 (-) 1644 WP_034025586.1 pyochelin biosynthesis salicyl-AMP ligase PchD -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=920875 AB3W22_RS03610 WP_003114685.1 755015..755512(+) (ssb) [Pseudomonas aeruginosa strain 1001d0_1]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=920875 AB3W22_RS03610 WP_003114685.1 755015..755512(+) (ssb) [Pseudomonas aeruginosa strain 1001d0_1]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGACGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGATTCGCAGCGCGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAGCAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAACCGGCCCAGGACTACGACAGCTTCGAC
GACGACATTCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515