Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   M3O54_RS16135 Genome accession   NZ_CP142004
Coordinates   3737682..3738740 (-) Length   352 a.a.
NCBI ID   WP_064629449.1    Uniprot ID   A0A3E1KPL1
Organism   Xanthomonas nasturtii strain 8853     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3732682..3743740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M3O54_RS16115 (M3O54_016100) - 3733763..3735706 (-) 1944 WP_064629445.1 type IV pilus secretin PilQ -
  M3O54_RS16120 (M3O54_016105) - 3735726..3736259 (-) 534 WP_047695636.1 pilus assembly protein PilP -
  M3O54_RS16125 (M3O54_016110) - 3736256..3736921 (-) 666 WP_006451354.1 type 4a pilus biogenesis protein PilO -
  M3O54_RS16130 (M3O54_016115) - 3736918..3737682 (-) 765 WP_064629447.1 PilN domain-containing protein -
  M3O54_RS16135 (M3O54_016120) comM 3737682..3738740 (-) 1059 WP_064629449.1 pilus assembly protein PilM Machinery gene
  M3O54_RS16140 (M3O54_016125) - 3738859..3741381 (+) 2523 WP_095522231.1 penicillin-binding protein 1A -
  M3O54_RS16145 (M3O54_016130) - 3741587..3742237 (+) 651 WP_064629454.1 hypothetical protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37609.21 Da        Isoelectric Point: 4.3924

>NTDB_id=920850 M3O54_RS16135 WP_064629449.1 3737682..3738740(-) (comM) [Xanthomonas nasturtii strain 8853]
MGLLPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKTIVEVEAVGEAIRRAINRSGSKAKNAAAA
VAGSAVITKLIPMPADLDDSDLEAQVELEATNYIPYPIEEVNLDFEVLGPMPNSPDMVQVLLAASRSENVELRQSALELG
GLTAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALSRLPEMVEEQLGVTTVVANPLA
QMTLGPKVQAHALALDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=920850 M3O54_RS16135 WP_064629449.1 3737682..3738740(-) (comM) [Xanthomonas nasturtii strain 8853]
GTGGGGCTTTTACCCAAGAGTCAGTCGCCACTGATTGGTGTCGACATTAGTTCTACTGCCGTGAAGCTCTTGCAGCTGTC
GCGCAGCGGGAACCGTTTCCGCGTGGAACATTACGCAGTAGAACCGTTGCCGCCGAATGCGGTCGTGGAAAAGACCATCG
TTGAAGTGGAGGCGGTGGGCGAAGCGATTCGTCGCGCCATCAACCGGTCCGGCAGCAAGGCCAAGAACGCGGCTGCGGCC
GTGGCAGGGTCTGCGGTGATCACCAAGTTGATCCCGATGCCTGCCGATCTGGACGACAGCGATCTGGAGGCCCAGGTCGA
ACTTGAAGCCACCAATTACATCCCGTACCCCATCGAGGAAGTGAATCTCGATTTCGAGGTGCTCGGTCCGATGCCCAACA
GCCCGGACATGGTGCAGGTGCTGCTGGCGGCCTCGCGCTCGGAGAATGTGGAACTGCGCCAGTCGGCGCTGGAACTCGGT
GGTCTGACCGCCAAGGTGATGGACGTGGAGGCCTTCGCGGTCGAAAACGCCTTTGCCCTGGTTGCCAGCGAACTGCCGGT
GGCCGCTGACGCAGTGGTGGCGCTGGTGGATATCGGCGCCACCATGACCACGCTGAGCGTGCTGCGTTCCGGTCGTAGCC
TGTACAGCCGCGAACAGGTGTTCGGCGGCAAGCAGCTCACCGACGAAGTGATGCGTCGCTATGGCCTGACCTACGAAGAA
GCCGGCCTGGCCAAGCGCCAGGGCGGGTTGCCGGAGAGCTACGAGGTCGAAGTGCTGGAGCCGTTCAAGGAAGCCACGGT
GCAGCAGATCAGCCGTTTGCTGCAGTTCTTCTATGCGGGCAGCGAATTCAATCGCGTCGACTGCATCGTGCTGGCCGGCG
GTTGCGCCGCGCTCTCGCGCCTGCCGGAGATGGTGGAAGAGCAGCTGGGCGTGACCACCGTGGTCGCCAACCCGCTCGCG
CAGATGACGCTGGGCCCGAAGGTTCAGGCCCATGCGCTGGCACTGGATGCGCCTGCATTGATGATCGCCACCGGCCTGGC
CCTGAGGAGCTTTGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3E1KPL1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter baylyi ADP1

50.997

99.716

0.509
  comM Acinetobacter nosocomialis M2

50.852

100

0.509
  pilM Acinetobacter baumannii D1279779

50.568

100

0.506
  pilM Legionella pneumophila strain ERS1305867

47.293

99.716

0.472