Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   VML59_RS25405 Genome accession   NZ_CP142003
Coordinates   4889373..4889885 (-) Length   170 a.a.
NCBI ID   WP_000981966.1    Uniprot ID   A0A0A3WKS9
Organism   Bacillus pacificus strain AT31     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4884373..4894885
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VML59_RS25385 rplI 4885583..4886029 (-) 447 WP_000864231.1 50S ribosomal protein L9 -
  VML59_RS25390 - 4886026..4887999 (-) 1974 WP_001113898.1 DHH family phosphoesterase -
  VML59_RS25395 - 4888078..4888959 (-) 882 WP_074567402.1 YybS family protein -
  VML59_RS25400 rpsR 4889094..4889327 (-) 234 WP_000918873.1 30S ribosomal protein S18 -
  VML59_RS25405 ssbA 4889373..4889885 (-) 513 WP_000981966.1 single-stranded DNA-binding protein Machinery gene
  VML59_RS25410 rpsF 4889912..4890202 (-) 291 WP_001233778.1 30S ribosomal protein S6 -
  VML59_RS25415 ychF 4890394..4891494 (-) 1101 WP_000524669.1 redox-regulated ATPase YchF -
  VML59_RS25420 - 4891610..4891807 (-) 198 WP_000436051.1 DUF951 domain-containing protein -
  VML59_RS25425 - 4891828..4892709 (-) 882 WP_000365103.1 mechanosensitive ion channel family protein -
  VML59_RS25430 yyaC 4892969..4893565 (+) 597 WP_014893384.1 spore protease YyaC -
  VML59_RS25435 spo0J 4893586..4894437 (-) 852 WP_001051812.1 stage 0 sporulation protein Spo0J -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18494.29 Da        Isoelectric Point: 4.9327

>NTDB_id=920836 VML59_RS25405 WP_000981966.1 4889373..4889885(-) (ssbA) [Bacillus pacificus strain AT31]
MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR
NYEGQDGKRVYVTEVLAESVQFLEPRNGGGEQRGSFNQQPSGAGFGNQGSNPFGQSSNSGNQGNSGFTKNDDPFSNVGQP
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=920836 VML59_RS25405 WP_000981966.1 4889373..4889885(-) (ssbA) [Bacillus pacificus strain AT31]
TTGATGAATCGTGTTATCCTCGTTGGTCGTTTAACTAAGGACCCTGACTTACGTTACACGCCCAATGGTGTTGCAGTAGC
TACTTTTACGTTAGCTGTGAATCGCGCATTTGCCAATCAACAAGGTGAGCGTGAAGCTGACTTTATTAATTGTGTAATAT
GGCGTAAACAAGCAGAAAACGTAGCAAATTATTTGAAAAAAGGTAGCTTAGCAGGCGTAGATGGACGTCTTCAAACTCGT
AATTACGAGGGACAAGATGGTAAACGTGTATACGTAACAGAAGTTCTTGCGGAAAGCGTACAATTTTTAGAGCCGCGTAA
TGGCGGTGGGGAGCAACGCGGTTCATTTAATCAGCAACCATCAGGAGCTGGTTTCGGTAACCAAGGCTCTAACCCATTTG
GTCAATCTAGTAATTCAGGTAACCAAGGTAACTCTGGATTTACGAAGAATGACGATCCATTTTCAAATGTAGGTCAACCG
ATCGACATTTCCGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A3WKS9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

72.571

100

0.747
  ssb Latilactobacillus sakei subsp. sakei 23K

58.621

100

0.6
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.094

62.353

0.406
  ssb Glaesserella parasuis strain SC1401

37.43

100

0.394