Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   VDS58_RS22410 Genome accession   NZ_CP141997
Coordinates   4182998..4183516 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain PM0031     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4177998..4188516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VDS58_RS22380 (VDS58_22380) yyaJ 4178508..4179863 (+) 1356 WP_014481501.1 MFS transporter -
  VDS58_RS22385 (VDS58_22385) maa 4179897..4180451 (-) 555 WP_121549258.1 sugar O-acetyltransferase -
  VDS58_RS22390 (VDS58_22390) yyaH 4180467..4180847 (-) 381 WP_069837909.1 VOC family protein -
  VDS58_RS22395 (VDS58_22395) ccpB 4180903..4181833 (-) 931 Protein_4361 transcriptional regulator CcpB -
  VDS58_RS22400 (VDS58_22400) xth 4181892..4182650 (-) 759 WP_121549260.1 exodeoxyribonuclease III -
  VDS58_RS22405 (VDS58_22405) rpsR 4182715..4182954 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  VDS58_RS22410 (VDS58_22410) ssbA 4182998..4183516 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  VDS58_RS22415 (VDS58_22415) rpsF 4183557..4183844 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  VDS58_RS22420 (VDS58_22420) ychF 4183955..4185055 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  VDS58_RS22425 (VDS58_22425) yyaE 4185182..4187185 (-) 2004 WP_121549262.1 molybdopterin-dependent oxidoreductase -
  VDS58_RS22430 (VDS58_22430) yyzM 4187236..4187442 (-) 207 WP_003226838.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=920764 VDS58_RS22410 WP_003219228.1 4182998..4183516(-) (ssbA) [Bacillus subtilis strain PM0031]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=920764 VDS58_RS22410 WP_003219228.1 4182998..4183516(-) (ssbA) [Bacillus subtilis strain PM0031]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378