Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   VDS58_RS19495 Genome accession   NZ_CP141997
Coordinates   3619956..3621113 (-) Length   385 a.a.
NCBI ID   WP_003227983.1    Uniprot ID   A0A199WDV9
Organism   Bacillus subtilis strain PM0031     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3614956..3626113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VDS58_RS19465 (VDS58_19465) yvyF 3615209..3615628 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  VDS58_RS19470 (VDS58_19470) comFC 3615702..3616424 (-) 723 WP_124047882.1 comF operon protein ComFC Machinery gene
  VDS58_RS19475 (VDS58_19475) comFB 3616388..3616684 (-) 297 WP_015483764.1 late competence protein ComFB -
  VDS58_RS19480 (VDS58_19480) comFA 3616744..3618135 (-) 1392 WP_072173458.1 ATP-dependent helicase ComFA Machinery gene
  VDS58_RS19485 (VDS58_19485) fakBA 3618241..3619086 (-) 846 WP_072173457.1 DegV family protein -
  VDS58_RS19490 (VDS58_19490) degU 3619184..3619873 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  VDS58_RS19495 (VDS58_19495) degS 3619956..3621113 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  VDS58_RS19500 (VDS58_19500) yvyE 3621330..3621983 (+) 654 WP_003227979.1 YigZ family protein -
  VDS58_RS19505 (VDS58_19505) tagV 3621983..3623158 (+) 1176 WP_072173456.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  VDS58_RS19510 (VDS58_19510) tagO 3623231..3624307 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -
  VDS58_RS19515 (VDS58_19515) tuaH 3624452..3625645 (-) 1194 WP_153257382.1 teichuronic acid biosynthesis protein TuaH -

Sequence

Protein


Download         Length: 385 a.a.        Molecular weight: 44957.76 Da        Isoelectric Point: 6.2957

>NTDB_id=920756 VDS58_RS19495 WP_003227983.1 3619956..3621113(-) (degS) [Bacillus subtilis strain PM0031]
MNKTKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVQTRHARNRLSEVSR
NFHRFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLREVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGAEDGFQEIKNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGETEDQRLAPQFEVALFRLAQEAVSNALKHSESEEITVKVEI
TKDFVILMIKDNGKGFDLKEAKEKKNKSFGLLGMKERVDLLEGTMTIDSKIGLGTFIMIKVPLSL

Nucleotide


Download         Length: 1158 bp        

>NTDB_id=920756 VDS58_RS19495 WP_003227983.1 3619956..3621113(-) (degS) [Bacillus subtilis strain PM0031]
ATGAATAAAACAAAGATGGATTCCAAAGTGCTGGATTCTATTTTGATGAAGATGCTGAAAACCGTTGACGGGAGCAAGGA
CGAAGTTTTTCAAATCGGTGAGCAGTCACGCCAGCAGTATGAACAGCTGGTTGAAGAACTGAAACAAATTAAACAGCAGG
TGTATGAAGTGATCGAGCTTGGCGATAAACTTGAAGTGCAAACCCGCCATGCGAGAAACCGTTTATCCGAGGTCAGCCGT
AATTTTCATAGATTCAGTGAAGAGGAAATCCGCAATGCTTATGAAAAAGCCCATAAGCTGCAGGTAGAATTGACGATGAT
CCAGCAGCGTGAGAAGCAATTGCGCGAACGGCGGGACGATTTGGAGCGCAGATTGCTAGGGCTTCAGGAAATCATTGAGC
GGTCAGAATCATTAGTAAGCCAAATTACAGTTGTGCTCAACTACTTGAATCAGGATTTGCGCGAAGTTGGACTGCTTCTT
GCTGATGCTCAGGCAAAACAGGATTTCGGCTTAAGGATTATTGAGGCGCAGGAAGAAGAGCGAAAAAGAGTCTCAAGAGA
AATCCATGACGGACCCGCTCAAATGCTGGCGAATGTTATGATGAGATCGGAATTAATCGAGCGGATTTTCCGTGACCGGG
GCGCAGAGGACGGATTCCAAGAAATTAAAAATCTACGCCAAAATGTTCGGAATGCCCTTTACGAAGTGAGAAGGATTATA
TATGATTTAAGACCGATGGCCCTTGATGACCTAGGCCTGATTCCAACTTTAAGAAAATATCTATATACAACCGAGGAATA
TAACGGGAAGGTCAAAATACATTTTCAGTGCATTGGAGAAACAGAGGATCAGAGGCTAGCGCCTCAGTTTGAGGTTGCGC
TCTTCAGGCTCGCACAGGAAGCTGTGTCTAATGCGCTAAAGCATTCTGAATCTGAAGAAATTACAGTCAAAGTTGAGATC
ACAAAGGATTTTGTGATTTTAATGATAAAAGATAACGGTAAAGGGTTCGACCTGAAGGAAGCGAAAGAGAAGAAAAACAA
ATCATTCGGCTTGCTGGGCATGAAAGAAAGAGTAGATTTATTGGAAGGAACGATGACAATAGATTCGAAAATAGGTCTTG
GGACATTTATTATGATTAAGGTTCCGTTATCTCTTTGA

Domains

Predicted by InterproScan.

Histidine kinase (HisKA_3)

(180-248)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(291-384)

Sensor protein DegS (DegS)

(12-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WDV9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

100

100

1