Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   VDS58_RS19490 Genome accession   NZ_CP141997
Coordinates   3619184..3619873 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain PM0031     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3614184..3624873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VDS58_RS19455 (VDS58_19455) flgN 3614364..3614846 (-) 483 WP_041351273.1 flagellar protein FlgN -
  VDS58_RS19460 (VDS58_19460) flgM 3614862..3615128 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  VDS58_RS19465 (VDS58_19465) yvyF 3615209..3615628 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  VDS58_RS19470 (VDS58_19470) comFC 3615702..3616424 (-) 723 WP_124047882.1 comF operon protein ComFC Machinery gene
  VDS58_RS19475 (VDS58_19475) comFB 3616388..3616684 (-) 297 WP_015483764.1 late competence protein ComFB -
  VDS58_RS19480 (VDS58_19480) comFA 3616744..3618135 (-) 1392 WP_072173458.1 ATP-dependent helicase ComFA Machinery gene
  VDS58_RS19485 (VDS58_19485) fakBA 3618241..3619086 (-) 846 WP_072173457.1 DegV family protein -
  VDS58_RS19490 (VDS58_19490) degU 3619184..3619873 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  VDS58_RS19495 (VDS58_19495) degS 3619956..3621113 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  VDS58_RS19500 (VDS58_19500) yvyE 3621330..3621983 (+) 654 WP_003227979.1 YigZ family protein -
  VDS58_RS19505 (VDS58_19505) tagV 3621983..3623158 (+) 1176 WP_072173456.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  VDS58_RS19510 (VDS58_19510) tagO 3623231..3624307 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=920755 VDS58_RS19490 WP_003219701.1 3619184..3619873(-) (degU) [Bacillus subtilis strain PM0031]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=920755 VDS58_RS19490 WP_003219701.1 3619184..3619873(-) (degU) [Bacillus subtilis strain PM0031]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGTTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1