Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   VDS58_RS19470 Genome accession   NZ_CP141997
Coordinates   3615702..3616424 (-) Length   240 a.a.
NCBI ID   WP_124047882.1    Uniprot ID   -
Organism   Bacillus subtilis strain PM0031     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3610702..3621424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VDS58_RS19435 (VDS58_19435) fliW 3610841..3611272 (-) 432 WP_124047883.1 flagellar assembly protein FliW -
  VDS58_RS19440 (VDS58_19440) yviE 3611293..3611868 (-) 576 WP_015384781.1 DUF6470 family protein -
  VDS58_RS19445 (VDS58_19445) flgL 3611915..3612811 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  VDS58_RS19450 (VDS58_19450) flgK 3612822..3614345 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  VDS58_RS19455 (VDS58_19455) flgN 3614364..3614846 (-) 483 WP_041351273.1 flagellar protein FlgN -
  VDS58_RS19460 (VDS58_19460) flgM 3614862..3615128 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  VDS58_RS19465 (VDS58_19465) yvyF 3615209..3615628 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  VDS58_RS19470 (VDS58_19470) comFC 3615702..3616424 (-) 723 WP_124047882.1 comF operon protein ComFC Machinery gene
  VDS58_RS19475 (VDS58_19475) comFB 3616388..3616684 (-) 297 WP_015483764.1 late competence protein ComFB -
  VDS58_RS19480 (VDS58_19480) comFA 3616744..3618135 (-) 1392 WP_072173458.1 ATP-dependent helicase ComFA Machinery gene
  VDS58_RS19485 (VDS58_19485) fakBA 3618241..3619086 (-) 846 WP_072173457.1 DegV family protein -
  VDS58_RS19490 (VDS58_19490) degU 3619184..3619873 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  VDS58_RS19495 (VDS58_19495) degS 3619956..3621113 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27522.77 Da        Isoelectric Point: 9.1349

>NTDB_id=920753 VDS58_RS19470 WP_124047882.1 3615702..3616424(-) (comFC) [Bacillus subtilis strain PM0031]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAEGMDIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=920753 VDS58_RS19470 WP_124047882.1 3615702..3616424(-) (comFC) [Bacillus subtilis strain PM0031]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGGATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGTTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

98.75

100

0.988