Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   VDS58_RS19480 Genome accession   NZ_CP141997
Coordinates   3616744..3618135 (-) Length   463 a.a.
NCBI ID   WP_072173458.1    Uniprot ID   -
Organism   Bacillus subtilis strain PM0031     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3611744..3623135
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VDS58_RS19445 (VDS58_19445) flgL 3611915..3612811 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  VDS58_RS19450 (VDS58_19450) flgK 3612822..3614345 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  VDS58_RS19455 (VDS58_19455) flgN 3614364..3614846 (-) 483 WP_041351273.1 flagellar protein FlgN -
  VDS58_RS19460 (VDS58_19460) flgM 3614862..3615128 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  VDS58_RS19465 (VDS58_19465) yvyF 3615209..3615628 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  VDS58_RS19470 (VDS58_19470) comFC 3615702..3616424 (-) 723 WP_124047882.1 comF operon protein ComFC Machinery gene
  VDS58_RS19475 (VDS58_19475) comFB 3616388..3616684 (-) 297 WP_015483764.1 late competence protein ComFB -
  VDS58_RS19480 (VDS58_19480) comFA 3616744..3618135 (-) 1392 WP_072173458.1 ATP-dependent helicase ComFA Machinery gene
  VDS58_RS19485 (VDS58_19485) fakBA 3618241..3619086 (-) 846 WP_072173457.1 DegV family protein -
  VDS58_RS19490 (VDS58_19490) degU 3619184..3619873 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  VDS58_RS19495 (VDS58_19495) degS 3619956..3621113 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  VDS58_RS19500 (VDS58_19500) yvyE 3621330..3621983 (+) 654 WP_003227979.1 YigZ family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52542.60 Da        Isoelectric Point: 9.9687

>NTDB_id=920754 VDS58_RS19480 WP_072173458.1 3616744..3618135(-) (comFA) [Bacillus subtilis strain PM0031]
MNVPVEKNSSFSRELQQTLRSRHLLRTELSFSDEMIEWHIKNGYITAENSISINKRGYRCNRCGQTDQRYYSFYHSSGKN
KLYCRSCVMMGRVSEEVPLYSWKEENEPNWKSIKLTWDGKLSSGQQKAANVLIEAISKKEELLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGADISALYGGSDDKGRLSPLMISTTHQLLRYKDAIDVMIIDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPKELKRKALNGQLHSVRIPARHHRKPLPEPRFVWCGNWKKKLNRNKIPPAVKR
WIEFHVKEGRPVFLFVPSVSILEKAAACFRGVHCRTASVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPKVQTGV
LGAESPIFTESALVQIAGRTGRHKEYADGDVIFFHFGKTKSMLDARKHIKEMNELAAKVECTD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=920754 VDS58_RS19480 WP_072173458.1 3616744..3618135(-) (comFA) [Bacillus subtilis strain PM0031]
GTGAATGTGCCAGTTGAAAAAAACAGTTCCTTTTCTAGAGAATTGCAGCAGACGCTTCGAAGCCGTCATTTGCTCAGGAC
TGAGCTCTCATTTTCCGATGAGATGATTGAATGGCATATCAAGAATGGATATATCACTGCTGAAAATTCTATATCCATAA
ATAAACGGGGATATAGATGTAATAGGTGCGGCCAAACTGATCAGCGGTATTATTCTTTTTATCACTCATCTGGAAAGAAT
AAGCTGTATTGCCGTTCCTGTGTCATGATGGGCAGAGTGAGTGAGGAGGTTCCTTTATATTCATGGAAAGAGGAAAATGA
ACCAAACTGGAAGTCAATTAAACTGACATGGGACGGCAAGCTTTCAAGCGGACAGCAAAAAGCCGCCAATGTTTTAATTG
AAGCAATATCAAAAAAAGAAGAGCTCCTCATCTGGGCGGTTTGCGGCGCTGGCAAAACAGAAATGCTGTTTCCTGGTATA
GAATCAGCGTTAAATCAAGGACTGCGTGTATGTATTGCAACACCTCGCACCGATGTTGTATTAGAGCTTGCTCCAAGGCT
CAAGGCTGCCTTTCAGGGTGCTGACATTTCAGCGCTTTACGGAGGAAGCGATGACAAAGGGCGGCTATCTCCGCTTATGA
TTTCCACTACGCATCAGCTTTTGCGATATAAAGATGCAATCGATGTTATGATCATTGATGAAGTTGACGCTTTTCCATAT
TCTGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCGTTTATTTAAGTGCAACACC
TCCTAAAGAATTAAAAAGAAAAGCACTGAACGGACAGTTACATTCAGTTCGCATCCCCGCAAGACACCACCGGAAACCTT
TACCCGAACCGCGCTTTGTATGGTGTGGAAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGCCAGCGGTGAAAAGA
TGGATAGAGTTTCATGTAAAAGAAGGGAGGCCTGTTTTTTTATTCGTTCCTTCCGTTTCTATTCTGGAAAAGGCTGCTGC
GTGCTTTAGAGGGGTTCATTGCCGAACCGCATCTGTGCACGCGGAAGACAAGCATAGAAAGGAGAAAGTGCAGCAATTCA
GAGATGGTCAGCTCGATCTATTAATCACAACAACAATACTGGAAAGAGGCGTCACAGTCCCCAAGGTGCAAACGGGTGTA
CTAGGAGCGGAATCACCTATCTTTACGGAAAGTGCACTTGTTCAAATTGCAGGAAGAACCGGCCGGCATAAAGAATATGC
GGACGGCGATGTCATTTTCTTTCACTTCGGCAAAACAAAGAGTATGCTCGATGCAAGAAAGCATATAAAAGAAATGAATG
AATTGGCAGCAAAAGTTGAATGTACAGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(120-268)

Helicase conserved C-terminal domain (Helicase_C)

(326-423)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

98.488

100

0.985