Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   U9L39_RS02225 Genome accession   NZ_CP141992
Coordinates   464417..464953 (+) Length   178 a.a.
NCBI ID   WP_004386202.1    Uniprot ID   A0A2S9UB01
Organism   Cronobacter malonaticus strain Dcc0527     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 459417..469953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U9L39_RS02210 (U9L39_02210) - 460402..460746 (-) 345 WP_105613624.1 hypothetical protein -
  U9L39_RS02215 (U9L39_02215) - 460759..461271 (-) 513 WP_174514319.1 hypothetical protein -
  U9L39_RS02220 (U9L39_02220) uvrA 461361..464186 (-) 2826 WP_105613625.1 excinuclease ABC subunit UvrA -
  U9L39_RS02225 (U9L39_02225) ssb 464417..464953 (+) 537 WP_004386202.1 single-stranded DNA-binding protein SSB1 Machinery gene
  U9L39_RS02230 (U9L39_02230) - 465299..466345 (+) 1047 WP_105613626.1 GGDEF domain-containing protein -
  U9L39_RS02235 (U9L39_02235) - 466521..466865 (+) 345 WP_032968434.1 hypothetical protein -
  U9L39_RS02240 (U9L39_02240) - 466928..467206 (-) 279 WP_007778502.1 YjcB family protein -
  U9L39_RS02245 (U9L39_02245) - 467794..469401 (+) 1608 WP_139155644.1 EAL domain-containing protein -
  U9L39_RS02250 (U9L39_02250) soxS 469389..469712 (-) 324 WP_004386206.1 superoxide response transcriptional regulator SoxS -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19109.11 Da        Isoelectric Point: 5.2358

>NTDB_id=920667 U9L39_RS02225 WP_004386202.1 464417..464953(+) (ssb) [Cronobacter malonaticus strain Dcc0527]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANLRLATSESWRDKQTGEMKEVTEWHSVVLYGKLAEVAGEYLRKGSQVYI
EGQLRTRKWQDQSGQDRYSTEVVVNVGGTMQMLGGRQGGGAGGNMGGGQQQGGWGQPQQPQQQGGGAQFSGGAQSRPQQQ
APAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=920667 U9L39_RS02225 WP_004386202.1 464417..464953(+) (ssb) [Cronobacter malonaticus strain Dcc0527]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGGCAGGACCCGGAAGTACGCTACATGCCGAACGG
CGGGGCCGTGGCGAACCTGCGCCTGGCGACTTCCGAATCCTGGCGCGATAAGCAGACCGGTGAGATGAAAGAAGTGACCG
AATGGCACAGCGTCGTGCTGTACGGCAAACTGGCGGAAGTCGCTGGCGAATACCTGCGCAAAGGCTCGCAGGTGTACATC
GAAGGTCAGCTGCGTACCCGTAAGTGGCAGGATCAGAGCGGTCAGGATCGCTATTCTACCGAAGTTGTTGTTAACGTCGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCAGGCGGCAACATGGGCGGCGGTCAGCAGCAGGGCGGTT
GGGGTCAGCCTCAGCAGCCGCAGCAGCAGGGTGGTGGCGCGCAGTTCAGCGGCGGCGCACAGTCTCGTCCGCAGCAGCAG
GCGCCAGCGCCTTCTAACGAACCGCCGATGGATTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S9UB01

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.725

100

0.764
  ssb Glaesserella parasuis strain SC1401

58.378

100

0.607
  ssb Neisseria meningitidis MC58

47.802

100

0.489
  ssb Neisseria gonorrhoeae MS11

47.802

100

0.489