Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   VPN06_RS06220 Genome accession   NZ_CP141950
Coordinates   1297564..1298943 (+) Length   459 a.a.
NCBI ID   WP_324681454.1    Uniprot ID   -
Organism   Bibersteinia trehalosi strain M01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1292564..1303943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VPN06_RS06190 yacG 1292781..1292987 (-) 207 WP_015432346.1 DNA gyrase inhibitor YacG -
  VPN06_RS06195 coaE 1292984..1293607 (-) 624 WP_324681449.1 dephospho-CoA kinase -
  VPN06_RS06200 - 1293637..1294233 (-) 597 WP_324681451.1 A24 family peptidase -
  VPN06_RS06205 pilC 1294299..1295495 (-) 1197 WP_324683794.1 type II secretion system F family protein Machinery gene
  VPN06_RS06210 pilB 1295488..1296885 (-) 1398 WP_015432350.1 GspE/PulE family protein Machinery gene
  VPN06_RS06215 pilA 1296943..1297389 (-) 447 WP_025267127.1 prepilin peptidase-dependent pilin Machinery gene
  VPN06_RS06220 radA 1297564..1298943 (+) 1380 WP_324681454.1 DNA repair protein RadA Machinery gene
  VPN06_RS06225 - 1299035..1300579 (-) 1545 WP_025289241.1 Na+/H+ antiporter NhaC family protein -
  VPN06_RS06230 - 1301084..1301485 (+) 402 WP_324681457.1 H-NS family nucleoid-associated regulatory protein -
  VPN06_RS06235 rnhA 1301827..1302285 (+) 459 WP_064318020.1 ribonuclease HI -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49531.27 Da        Isoelectric Point: 8.3945

>NTDB_id=920603 VPN06_RS06220 WP_324681454.1 1297564..1298943(+) (radA) [Bibersteinia trehalosi strain M01]
MAKAPKTAYVCSDCGEEYSKWMGQCRACLAWNTISEVRLISSKQETKGTRFSGYAGQTSGKVQTLSEISLQEVPRFSSGF
NELDRVLGGGIVPGSAILIGGHPGAGKSTLLLQVMCGLSSRLPTLYVTGEESLQQVAMRANRLGLPTEHLKMLSETSVEH
ICNLADLEKPKLMVIDSIQVMHLADIQSSPGSVAQVRECASFLTRYAKTRQVAIIMVGHVTKDGTLAGPKVLEHAIDASL
LLEGEADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVKNPSAIFLSRSEEQTSGSSVMVLWEGTRPLLVEIQALVDHS
MLANPRRVAVGLEQNRLSLLLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALLLALLSSFRNRPLPHDLVVFGEVG
LAGEIRPVPSGQERISEAAKHGFKRAIVPAGNIPKKSIKGMEVLGVKKLSDALDIVANL

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=920603 VPN06_RS06220 WP_324681454.1 1297564..1298943(+) (radA) [Bibersteinia trehalosi strain M01]
ATGGCAAAAGCACCGAAAACCGCTTATGTATGTAGTGATTGTGGCGAAGAGTATTCAAAATGGATGGGGCAATGTCGTGC
TTGTTTAGCATGGAATACGATTAGTGAAGTACGGTTAATTTCGTCAAAACAAGAAACCAAAGGTACTCGCTTTAGTGGCT
ACGCGGGGCAAACTTCTGGTAAGGTACAAACGCTTTCAGAGATCAGCTTGCAGGAAGTACCAAGGTTTAGCAGTGGCTTT
AATGAACTAGATCGAGTATTAGGCGGAGGGATTGTACCTGGAAGTGCAATTTTAATTGGCGGGCATCCCGGGGCAGGAAA
AAGCACTTTATTACTCCAAGTTATGTGTGGGTTGTCATCAAGATTGCCAACACTCTATGTAACAGGTGAAGAATCATTAC
AACAGGTTGCCATGCGAGCAAATCGTTTGGGGTTACCAACCGAGCATTTGAAGATGCTTTCAGAAACCTCTGTTGAGCAT
ATTTGTAATCTTGCAGATCTGGAAAAACCCAAATTGATGGTTATTGATTCTATTCAGGTCATGCATCTTGCTGATATTCA
ATCTTCTCCAGGGAGTGTTGCACAGGTGCGAGAATGTGCTTCTTTTTTAACTCGTTATGCGAAAACCCGTCAAGTTGCGA
TTATTATGGTTGGACATGTGACGAAAGATGGTACATTAGCAGGTCCAAAAGTGTTAGAACATGCGATTGATGCTTCATTA
TTGTTAGAAGGGGAGGCAGATAGTCGCTTTAGAACCTTGCGTAGTCATAAGAACCGTTTTGGTGCAGTGAATGAACTCGG
TGTGTTTGCTATGACTGAGCAAGGTTTACGTGAAGTGAAAAATCCATCAGCGATTTTCTTAAGTCGAAGTGAAGAACAAA
CTTCTGGCAGTTCAGTTATGGTGCTTTGGGAAGGAACACGTCCATTATTAGTGGAAATTCAGGCATTAGTTGATCACTCT
ATGCTTGCCAATCCTCGCCGAGTTGCAGTGGGATTAGAGCAGAACCGTTTATCTCTATTACTAGCTGTTTTGCATCGTCA
TGGTGGCTTACAAATGTCTGATCAAGATGTGTTTGTCAATGTCGTTGGCGGAGTAAAAGTGACTGAAACTAGTGCAGATT
TAGCCCTGCTGTTAGCCTTGCTTTCTAGTTTTCGTAACCGACCATTGCCTCATGATCTGGTGGTTTTTGGTGAAGTAGGG
CTAGCAGGTGAAATCCGCCCAGTACCTAGTGGACAAGAGCGTATTAGTGAAGCCGCAAAACATGGATTTAAGCGCGCGAT
TGTCCCTGCTGGAAACATACCAAAGAAATCAATTAAGGGGATGGAAGTGCTTGGTGTGAAAAAGCTAAGTGATGCGTTGG
ATATTGTTGCGAATCTTTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(80-224)

Subunit ChlI of Mg-chelatase (ChlI)

(347-432)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.465

99.346

0.481
  radA Streptococcus mitis NCTC 12261

43.913

100

0.44
  radA Streptococcus mitis SK321

43.506

100

0.438
  radA Streptococcus pneumoniae TIGR4

43.545

99.564

0.434
  radA Streptococcus pneumoniae D39

43.545

99.564

0.434
  radA Streptococcus pneumoniae Rx1

43.545

99.564

0.434
  radA Streptococcus pneumoniae R6

43.545

99.564

0.434