Detailed information NTG0920600

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: VPN06_RS06205
• Genome accession: NZ_CP141950
• Coordinates: 1294299..1295495 (-)
• Length: 398 a.a.
• NCBI ID: WP_324683794.1
• Uniprot ID: -
• Organism: Bibersteinia trehalosi strain M01
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1289299..1300495

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VPN06_RS06170	-	1289465..1289983 (+)	519	WP_324681443.1	PTS sugar transporter subunit IIA	-
VPN06_RS06175	rapZ	1289983..1290846 (+)	864	WP_025289235.1	RNase adapter RapZ	-
VPN06_RS06180	-	1290848..1292032 (+)	1185	WP_324681445.1	FAD-dependent monooxygenase	-
VPN06_RS06185	-	1292167..1292721 (+)	555	WP_025267130.1	hypothetical protein	-
VPN06_RS06190	yacG	1292781..1292987 (-)	207	WP_015432346.1	DNA gyrase inhibitor YacG	-
VPN06_RS06195	coaE	1292984..1293607 (-)	624	WP_324681449.1	dephospho-CoA kinase	-
VPN06_RS06200	-	1293637..1294233 (-)	597	WP_324681451.1	A24 family peptidase	-
VPN06_RS06205	pilC	1294299..1295495 (-)	1197	WP_324683794.1	type II secretion system F family protein	Machinery gene
VPN06_RS06210	pilB	1295488..1296885 (-)	1398	WP_015432350.1	GspE/PulE family protein	Machinery gene
VPN06_RS06215	pilA	1296943..1297389 (-)	447	WP_025267127.1	prepilin peptidase-dependent pilin	Machinery gene
VPN06_RS06220	radA	1297564..1298943 (+)	1380	WP_324681454.1	DNA repair protein RadA	Machinery gene

Sequence

Protein

• Length: 398 a.a.
• Molecular weight: 45974.43 Da
• Isoelectric Point: 9.9025

>NTDB_id=920600 VPN06_RS06205 WP_324683794.1 1294299..1295495(-) (pilC) [Bibersteinia trehalosi strain M01]
MFNVYEFRWQARDRFGQKQSGKQLAESTQQLEQRLQQQGFSHIRIQRNFVLPQQPKSSEITQFLQQFALLANATIPLKLS
LTMLLENCQNSKIYLWLRAVIQQLENGFSLAQSFENTGKFLTQQEIQLIKIGEQSGELNKILSNISQNRQRSEQLNKKLK
KILFYPIMILFISISLSVLLLLFIVPKFAELYDAKNRELPLMTKILFYLSDFLQHHFIALLISIISLSLLLYFISKKTQI
LTRLKAQILSILPLFKQIHLQARLVFFCYNCGLMLQAHLRLDSVLDSFISAKSNDPILSPELSKTLARLKQGYRLSDSLP
AHLFPNEVLQMIKVGEQSGKLAEMLLQVSEIYRQKLEYQIDLLSQMLEPLLMLVIGFIVGTILIGLYLPIFDMGAMIE

Nucleotide

• Length: 1197 bp

>NTDB_id=920600 VPN06_RS06205 WP_324683794.1 1294299..1295495(-) (pilC) [Bibersteinia trehalosi strain M01]
ATGTTTAACGTTTATGAATTTCGTTGGCAAGCACGTGATCGTTTTGGGCAAAAACAATCTGGTAAACAGCTTGCTGAAAG
CACGCAACAACTTGAGCAACGCTTGCAACAGCAGGGCTTCAGTCATATTCGCATTCAGCGGAATTTTGTTTTACCACAAC
AACCAAAATCAAGTGAAATTACACAATTTTTACAGCAATTTGCTCTGCTGGCTAACGCAACTATTCCGCTAAAACTCAGC
TTAACAATGCTGTTAGAAAACTGCCAAAACAGCAAAATATATTTGTGGCTAAGAGCTGTTATTCAGCAACTTGAAAATGG
CTTCTCTCTTGCTCAATCCTTTGAAAATACGGGGAAATTTCTTACACAGCAAGAAATACAGCTCATTAAAATTGGCGAAC
AAAGTGGCGAGCTCAATAAGATTTTAAGCAATATCTCACAAAATCGTCAACGTAGTGAACAACTCAATAAAAAACTCAAA
AAAATTTTATTTTATCCCATCATGATCTTGTTCATTTCCATTAGCTTATCTGTACTTCTTCTATTATTTATTGTTCCTAA
ATTCGCAGAGCTTTATGATGCTAAAAACAGAGAGCTACCGTTAATGACAAAGATTCTCTTCTACTTGTCAGATTTTTTAC
AACACCACTTTATTGCACTACTCATTTCCATTATAAGTTTAAGCTTGTTACTATATTTTATTAGTAAAAAAACTCAAATT
CTTACCCGCTTGAAAGCTCAGATTCTTTCTATTCTACCACTGTTTAAGCAAATCCATTTACAGGCTCGTTTAGTCTTTTT
CTGCTACAACTGTGGACTAATGCTGCAAGCACACTTACGTCTTGACAGCGTACTTGATAGTTTTATCTCAGCCAAAAGCA
ACGATCCTATTTTATCCCCCGAACTTTCTAAAACATTAGCTCGCTTAAAGCAAGGCTATAGGCTCTCTGACAGCTTACCT
GCCCATTTATTTCCAAATGAAGTATTACAAATGATAAAGGTAGGTGAACAAAGTGGGAAACTGGCCGAGATGTTATTACA
AGTGAGTGAAATTTATCGCCAAAAATTAGAATATCAAATTGACTTACTTTCACAAATGCTAGAGCCACTGTTAATGCTCG
TGATAGGATTCATTGTCGGCACTATTTTAATCGGTTTATATCTACCTATTTTTGATATGGGAGCAATGATTGAATGA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (267-389)

• Type II secretion system (T2SS), protein F (T2SSF) (63-186)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Glaesserella parasuis strain SC1401	58.543	100	0.585
pilC	Haemophilus influenzae Rd KW20	43.89	100	0.442
pilC	Haemophilus influenzae 86-028NP	43.142	100	0.435