Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   OCU78_RS07940 Genome accession   NZ_AP025490
Coordinates   1848053..1848634 (-) Length   193 a.a.
NCBI ID   WP_137373099.1    Uniprot ID   -
Organism   Vibrio gallaecicus strain CECT 7244     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1843053..1853634
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU78_RS07920 - 1843319..1844581 (-) 1263 WP_137373103.1 DUF945 family protein -
  OCU78_RS07925 - 1844766..1846730 (+) 1965 WP_137373102.1 ATP-binding protein -
  OCU78_RS07930 - 1846723..1847220 (+) 498 WP_137373101.1 response regulator -
  OCU78_RS07935 - 1847406..1847957 (+) 552 WP_137373100.1 hypothetical protein -
  OCU78_RS07940 tfoX 1848053..1848634 (-) 582 WP_137373099.1 TfoX/Sxy family DNA transformation protein Regulator
  OCU78_RS07945 - 1849006..1849926 (+) 921 WP_137373098.1 HDOD domain-containing protein -
  OCU78_RS07950 - 1849945..1850850 (+) 906 WP_137373097.1 lysine exporter LysO family protein -
  OCU78_RS07955 - 1851045..1851557 (+) 513 WP_137373096.1 hypothetical protein -
  OCU78_RS07960 panP 1851675..1853318 (+) 1644 WP_137373095.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 22173.36 Da        Isoelectric Point: 8.6340

>NTDB_id=92052 OCU78_RS07940 WP_137373099.1 1848053..1848634(-) (tfoX) [Vibrio gallaecicus strain CECT 7244]
MTDQAFYNYMGTFGEYQNRSMFGGIGLFQNEAMFALVSEGCLYIRGGNTLDKKLTDLNCEKYRHVKKQTTATVNYYDITQ
LFSNDHPGLDEIIRMSIDNSIQQRSFQKSTASRRLRDLPNMQLTLERMVKKAGVDDVSTFMQLGASEVFVKVRKAYGNDV
DVKLLWKFAGAIDGIHWKLLQEPRKQQLLESCQ

Nucleotide


Download         Length: 582 bp        

>NTDB_id=92052 OCU78_RS07940 WP_137373099.1 1848053..1848634(-) (tfoX) [Vibrio gallaecicus strain CECT 7244]
ATGACGGATCAAGCATTTTATAACTACATGGGTACATTCGGAGAATACCAAAATCGTTCTATGTTTGGCGGTATAGGTTT
ATTTCAAAACGAAGCCATGTTTGCACTTGTCAGTGAAGGTTGTTTATATATTCGAGGTGGTAATACTCTAGATAAAAAAT
TGACGGATTTAAATTGCGAAAAGTACAGACACGTTAAGAAGCAAACGACAGCAACAGTTAACTATTACGATATTACTCAA
TTATTTTCTAATGATCATCCTGGCTTAGATGAAATCATCAGAATGTCTATTGATAACTCTATTCAGCAACGCAGCTTTCA
AAAATCAACGGCAAGCAGACGCTTACGTGATTTACCGAATATGCAATTAACGCTGGAGCGTATGGTTAAAAAAGCGGGTG
TTGATGATGTATCTACTTTTATGCAGTTGGGGGCTTCAGAAGTCTTTGTAAAAGTTCGCAAAGCGTATGGTAATGATGTT
GATGTTAAACTGCTTTGGAAATTTGCAGGGGCAATCGACGGAATTCATTGGAAACTACTTCAAGAGCCTCGCAAACAACA
GCTACTTGAAAGTTGTCAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(10-98)

TfoX C-terminal domain (TfoX_C)

(112-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio campbellii strain DS40M4

74.093

100

0.741
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

73.575

100

0.736
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

73.575

100

0.736
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

73.575

100

0.736
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

73.575

100

0.736
  tfoX Vibrio cholerae strain A1552

73.575

100

0.736
  tfoX Vibrio parahaemolyticus RIMD 2210633

73.057

100

0.731
  tfoX Aliivibrio fischeri ES114

56.316

98.446

0.554

Multiple sequence alignment