Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   VKS18_RS19415 Genome accession   NZ_CP141895
Coordinates   3913202..3913720 (-) Length   172 a.a.
NCBI ID   WP_007615071.1    Uniprot ID   -
Organism   Bacillus velezensis strain B004     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3908202..3918720
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VKS18_RS19385 (VKS18_09310) - 3909403..3909783 (-) 381 WP_032875338.1 VOC family protein -
  VKS18_RS19390 (VKS18_09315) - 3909840..3910778 (-) 939 WP_032875335.1 LacI family DNA-binding transcriptional regulator -
  VKS18_RS19395 (VKS18_09320) xth 3910841..3911599 (-) 759 WP_032875332.1 exodeoxyribonuclease III -
  VKS18_RS19400 (VKS18_09325) - 3911596..3912153 (-) 558 WP_032875329.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  VKS18_RS19405 (VKS18_09330) - 3912150..3912731 (-) 582 WP_032875326.1 bifunctional transcriptional activator/DNA repair enzyme AdaA -
  VKS18_RS19410 (VKS18_09335) rpsR 3912919..3913158 (-) 240 WP_029325793.1 30S ribosomal protein S18 -
  VKS18_RS19415 (VKS18_09340) ssbA 3913202..3913720 (-) 519 WP_007615071.1 single-stranded DNA-binding protein SsbA Machinery gene
  VKS18_RS19420 (VKS18_09345) rpsF 3913760..3914047 (-) 288 WP_004392977.1 30S ribosomal protein S6 -
  VKS18_RS19425 (VKS18_09350) ychF 3914159..3915259 (-) 1101 WP_004392975.1 redox-regulated ATPase YchF -
  VKS18_RS19430 (VKS18_09355) - 3915386..3917389 (-) 2004 WP_032875323.1 molybdopterin-dependent oxidoreductase -
  VKS18_RS19435 (VKS18_09360) - 3917436..3917642 (-) 207 WP_004392973.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18772.33 Da        Isoelectric Point: 4.7621

>NTDB_id=920402 VKS18_RS19415 WP_007615071.1 3913202..3913720(-) (ssbA) [Bacillus velezensis strain B004]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNNGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=920402 VKS18_RS19415 WP_007615071.1 3913202..3913720(-) (ssbA) [Bacillus velezensis strain B004]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAGCGGTGCGGCTGTCGC
CACGTTTACTCTTGCTGTGAATCGTACATTCACGAACCAGTCCGGAGAACGTGAAGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTTCTTAAAAAAGGAAGCCTTGCCGGCGTAGACGGCCGACTCCAGACAAGA
AATTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAAGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAA
CAACGGCGGTTCTGGATCAGGCGGATACAACGAAGGAAACAGCGGCGGAGGCCAATACTTTGGCGGAGGCCAAAATGATA
ATCCGTTCGGCGGAAATCAGAACAACCAGAGACGAAATCAAGGGAACAGCTTTAATGATGATCCATTTGCCAACGACGGC
AAGCCGATTGACATCTCGGATGATGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

98.837

100

0.988
  ssb Latilactobacillus sakei subsp. sakei 23K

58.757

100

0.605
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

34.973

100

0.372