Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   OCV50_RS13230 Genome accession   NZ_AP025487
Coordinates   2971623..2972222 (-) Length   199 a.a.
NCBI ID   WP_261903243.1    Uniprot ID   -
Organism   Vibrio fortis strain LMG 21557     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2966623..2977222
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV50_RS13205 aroB 2966968..2968056 (-) 1089 WP_261903240.1 3-dehydroquinate synthase -
  OCV50_RS13210 aroK 2968081..2968599 (-) 519 WP_032550005.1 shikimate kinase AroK -
  OCV50_RS13215 - 2968774..2970402 (-) 1629 Protein_2512 type IV pilus secretin PilQ -
  OCV50_RS13220 pilP 2970532..2971050 (-) 519 WP_261903242.1 pilus assembly protein PilP Machinery gene
  OCV50_RS13225 pilO 2971037..2971630 (-) 594 WP_239841916.1 type 4a pilus biogenesis protein PilO Machinery gene
  OCV50_RS13230 pilN 2971623..2972222 (-) 600 WP_261903243.1 PilN domain-containing protein Machinery gene
  OCV50_RS13235 pilM 2972206..2973231 (-) 1026 WP_261903244.1 type IV pilus assembly protein PilM Machinery gene
  OCV50_RS13240 - 2973379..2975937 (+) 2559 WP_261903245.1 penicillin-binding protein 1A -
  OCV50_RS13245 oxyR 2976025..2976912 (-) 888 WP_239841920.1 DNA-binding transcriptional regulator OxyR -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 22885.39 Da        Isoelectric Point: 10.0930

>NTDB_id=92022 OCV50_RS13230 WP_261903243.1 2971623..2972222(-) (pilN) [Vibrio fortis strain LMG 21557]
MLHQINLLPWRDELRAQHKKRFIQLVILGTLMAVMGQWAIGHYFQQEKARQQARLNYLEQYIGQLDKQIRSLKVAEREHK
AILTRLDVVESLQSGRNKTTHFMNLMPELIPEGVYVDKIKMNGQEIEMSGISDSTARLATMLDNLERSPSLNNVEMHSIV
HNRKRFNKEFQTFKVSFGFVPSSVDQMPALNAAQGASHG

Nucleotide


Download         Length: 600 bp        

>NTDB_id=92022 OCV50_RS13230 WP_261903243.1 2971623..2972222(-) (pilN) [Vibrio fortis strain LMG 21557]
ATGTTGCATCAAATTAATCTCCTTCCTTGGCGTGATGAGCTTCGAGCGCAACACAAGAAACGCTTCATTCAGTTGGTGAT
CTTAGGCACCTTGATGGCGGTCATGGGGCAGTGGGCGATTGGGCACTATTTCCAACAAGAAAAAGCTCGTCAGCAAGCCC
GTCTTAACTATCTTGAACAGTATATTGGTCAGCTTGATAAACAGATTCGTTCTTTGAAAGTGGCAGAGCGGGAGCATAAA
GCCATTCTAACTCGGTTAGATGTGGTGGAGTCTTTACAGTCTGGGCGCAACAAAACCACTCACTTTATGAATCTGATGCC
TGAACTTATCCCAGAAGGCGTCTATGTCGATAAGATTAAGATGAATGGACAAGAAATTGAGATGTCTGGGATCAGCGACA
GTACCGCACGGCTTGCCACCATGCTCGATAACCTAGAGCGTTCTCCTTCCCTTAATAATGTTGAAATGCACTCTATTGTG
CACAATCGCAAGCGTTTTAATAAAGAGTTTCAAACCTTTAAGGTTTCATTTGGTTTTGTTCCCTCCTCTGTAGATCAGAT
GCCAGCACTTAACGCAGCTCAAGGGGCGTCACATGGTTAA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(102-175)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Vibrio cholerae strain A1552

62.121

99.497

0.618
  pilN Vibrio campbellii strain DS40M4

63.043

92.462

0.583

Multiple sequence alignment