Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   OCV50_RS13220 Genome accession   NZ_AP025487
Coordinates   2970532..2971050 (-) Length   172 a.a.
NCBI ID   WP_261903242.1    Uniprot ID   -
Organism   Vibrio fortis strain LMG 21557     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2965532..2976050
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV50_RS23305 - 2966499..2966885 (-) 387 Protein_2509 ATP-binding protein -
  OCV50_RS13205 aroB 2966968..2968056 (-) 1089 WP_261903240.1 3-dehydroquinate synthase -
  OCV50_RS13210 aroK 2968081..2968599 (-) 519 WP_032550005.1 shikimate kinase AroK -
  OCV50_RS13215 - 2968774..2970402 (-) 1629 Protein_2512 type IV pilus secretin PilQ -
  OCV50_RS13220 pilP 2970532..2971050 (-) 519 WP_261903242.1 pilus assembly protein PilP Machinery gene
  OCV50_RS13225 pilO 2971037..2971630 (-) 594 WP_239841916.1 type 4a pilus biogenesis protein PilO Machinery gene
  OCV50_RS13230 pilN 2971623..2972222 (-) 600 WP_261903243.1 PilN domain-containing protein Machinery gene
  OCV50_RS13235 pilM 2972206..2973231 (-) 1026 WP_261903244.1 type IV pilus assembly protein PilM Machinery gene
  OCV50_RS13240 - 2973379..2975937 (+) 2559 WP_261903245.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19266.44 Da        Isoelectric Point: 10.5789

>NTDB_id=92020 OCV50_RS13220 WP_261903242.1 2970532..2971050(-) (pilP) [Vibrio fortis strain LMG 21557]
MNLVRALLVLLIVSVVAGCKANQDSLEDFVVQVEARARKDVEQLGPTSEFVAVQYQQKTHRSPFELPKEAIVLTQPKAKK
DCWQPTRRSRTGKLEKYPLDQLRLKGVMGSGSQVSGLVQTPKGNVVKVQKDQFIGLNNGRITKVTSQYVMINETLPDGLG
CWHRRNVRLALK

Nucleotide


Download         Length: 519 bp        

>NTDB_id=92020 OCV50_RS13220 WP_261903242.1 2970532..2971050(-) (pilP) [Vibrio fortis strain LMG 21557]
ATGAATCTCGTTAGAGCCTTGCTGGTGCTGTTGATTGTCTCAGTTGTTGCTGGGTGTAAGGCCAACCAAGATTCGTTAGA
GGATTTTGTTGTGCAGGTAGAGGCTCGAGCACGTAAAGATGTGGAGCAGTTAGGACCTACCTCTGAGTTTGTCGCTGTGC
AATATCAGCAAAAGACCCACCGCTCACCGTTTGAGTTGCCCAAAGAGGCGATTGTACTGACACAGCCTAAAGCGAAAAAG
GATTGCTGGCAGCCAACGCGACGTAGTCGTACCGGGAAGTTAGAAAAATACCCGCTTGACCAGTTGCGACTCAAGGGAGT
TATGGGCAGTGGCAGTCAGGTGTCTGGCCTTGTTCAAACTCCAAAAGGCAATGTCGTTAAAGTGCAGAAAGACCAGTTCA
TTGGCTTAAATAATGGACGTATTACTAAGGTCACCAGTCAGTACGTAATGATTAATGAAACCCTTCCAGATGGTCTAGGT
TGTTGGCATCGACGCAATGTCCGCTTAGCTCTCAAATAA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio cholerae strain A1552

60.606

95.93

0.581
  pilP Vibrio campbellii strain DS40M4

58.333

97.674

0.57

Multiple sequence alignment