Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   VDS57_RS11655 Genome accession   NZ_CP141839
Coordinates   2188580..2188978 (-) Length   132 a.a.
NCBI ID   WP_014478800.1    Uniprot ID   A0A0D1L5A4
Organism   Bacillus subtilis strain PN1236     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2183580..2193978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VDS57_RS11620 (VDS57_11620) - 2184330..2184527 (+) 198 WP_121509395.1 hypothetical protein -
  VDS57_RS11625 (VDS57_11625) yckC 2184547..2185002 (+) 456 WP_014478793.1 RDD family protein -
  VDS57_RS11630 (VDS57_11630) yckD 2185084..2185416 (+) 333 WP_014478794.1 YckD family protein -
  VDS57_RS11635 (VDS57_11635) - 2185544..2185966 (+) 423 WP_014478795.1 MarR family winged helix-turn-helix transcriptional regulator -
  VDS57_RS11640 (VDS57_11640) - 2185954..2186274 (+) 321 WP_014478796.1 DUF3147 family protein -
  VDS57_RS11645 (VDS57_11645) - 2186293..2187037 (+) 745 Protein_2245 AAA family ATPase -
  VDS57_RS11650 (VDS57_11650) bglC 2187110..2188543 (+) 1434 WP_014478799.1 6-phospho-beta-glucosidase -
  VDS57_RS11655 (VDS57_11655) nin/comJ 2188580..2188978 (-) 399 WP_014478800.1 DNA-entry nuclease inhibitor Regulator
  VDS57_RS11660 (VDS57_11660) nucA/comI 2189005..2189454 (-) 450 WP_014475770.1 DNA-entry nuclease Machinery gene
  VDS57_RS11665 (VDS57_11665) tlpC 2189622..2191343 (-) 1722 Protein_2249 methyl-accepting chemotaxis protein TlpC -
  VDS57_RS11670 (VDS57_11670) hxlB 2191454..2192011 (-) 558 WP_014478803.1 6-phospho-3-hexuloisomerase -
  VDS57_RS11675 (VDS57_11675) hxlA 2192017..2192649 (-) 633 WP_003234604.1 3-hexulose-6-phosphate synthase -
  VDS57_RS11680 (VDS57_11680) hxlR 2192878..2193240 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 15006.98 Da        Isoelectric Point: 4.8991

>NTDB_id=920155 VDS57_RS11655 WP_014478800.1 2188580..2188978(-) (nin/comJ) [Bacillus subtilis strain PN1236]
MIKSWKPQELSISYHQFTVFQKDSTPPIMDWTDEAIEKGYTAADGAISFEAQRNTKAFILLRLNSSETVNSYEKKVTVPF
HVTENGIHIESIMSKRLSFDLPKGDYQLTCWTVPAEMSDLHADTYIIDAVSV

Nucleotide


Download         Length: 399 bp        

>NTDB_id=920155 VDS57_RS11655 WP_014478800.1 2188580..2188978(-) (nin/comJ) [Bacillus subtilis strain PN1236]
TTGATCAAATCATGGAAGCCGCAAGAACTTTCGATTTCATATCATCAATTTACTGTATTTCAAAAGGATTCTACACCTCC
TATAATGGATTGGACTGACGAAGCGATTGAAAAAGGATATACTGCGGCAGACGGAGCCATTTCATTTGAGGCACAGCGAA
ATACAAAGGCCTTTATTCTTTTGCGCCTGAACAGTTCAGAAACAGTAAACTCCTACGAAAAAAAAGTGACTGTTCCTTTT
CATGTCACAGAAAACGGAATTCATATTGAAAGCATTATGTCTAAGAGACTGTCCTTTGATCTGCCTAAAGGAGACTATCA
ATTGACATGCTGGACTGTGCCGGCTGAAATGTCAGATTTGCACGCCGACACTTATATTATTGATGCTGTTTCTGTGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1L5A4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

97.727

100

0.977