Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   VDS57_RS11850 Genome accession   NZ_CP141839
Coordinates   2247246..2248394 (+) Length   382 a.a.
NCBI ID   WP_017696151.1    Uniprot ID   A0AAP2M3C2
Organism   Bacillus subtilis strain PN1236     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2242246..2253394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VDS57_RS11830 (VDS57_11830) yclH 2242622..2243302 (-) 681 WP_014478826.1 ABC transporter ATP-binding protein -
  VDS57_RS11835 (VDS57_11835) yclI 2243318..2244778 (-) 1461 WP_103330346.1 ABC transporter permease -
  VDS57_RS11840 (VDS57_11840) yclJ 2244991..2245674 (+) 684 WP_003246532.1 two-component system response regulator YclJ -
  VDS57_RS11845 (VDS57_11845) yclK 2245661..2247082 (+) 1422 WP_324271385.1 two-component system sensor histidine kinase YclK -
  VDS57_RS11850 (VDS57_11850) rapC 2247246..2248394 (+) 1149 WP_017696151.1 response regulator aspartate phosphatase RapC Regulator
  VDS57_RS11855 (VDS57_11855) phrC 2248378..2248500 (+) 123 WP_003224994.1 phosphatase RapC inhibitor PhrC Regulator
  VDS57_RS11860 (VDS57_11860) yczM 2248600..2248689 (-) 90 WP_015482794.1 YjcZ family sporulation protein -
  VDS57_RS11865 (VDS57_11865) yczN 2248771..2248884 (-) 114 WP_003234495.1 YjcZ family sporulation protein -
  VDS57_RS11870 (VDS57_11870) thrD 2249038..2250402 (-) 1365 WP_033883679.1 aspartate kinase -
  VDS57_RS11875 (VDS57_11875) ceuB 2250787..2251737 (+) 951 WP_014475804.1 petrobactin ABC transporter permease YclN Machinery gene
  VDS57_RS11880 (VDS57_11880) yclO 2251730..2252677 (+) 948 WP_003246705.1 petrobactin ABC transporter permease YclO -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 45649.69 Da        Isoelectric Point: 5.0423

>NTDB_id=920157 VDS57_RS11850 WP_017696151.1 2247246..2248394(+) (rapC) [Bacillus subtilis strain PN1236]
MKSGVIPSSAVGQKINEWYKYIRTFSVPDAEVLKAEIQQELKHMQHDSNLLLYYSLMEFRHQLMLDYLEPLEKLNIEDQP
SLSELSRNIDSNQADLKGLLDYYVNFFRGMYEFDKREFISAITYYKQAEKKLSFVADHIERAEFYFKIAEAYYYMKQTYF
SLINIKNAYEIYVEQETYNVRIIQCHFVFGVNLMDERNFEQAARHFKLALNMAQAEQKAQLVGRAYYNLGLCYYNQDLLD
PAIDYFEKAVSTFESSRIVNSLPQAYFLITLIYYKRGKHDKASEYHKRGYEYAKETDDADYAVKFEFLQSLYQDQPNEEG
IERCFQYLKNKNMYADIEDLALEVAKYYYEQKWFKLSASYFLQVEEARKQIQRSEGLYEIEI

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=920157 VDS57_RS11850 WP_017696151.1 2247246..2248394(+) (rapC) [Bacillus subtilis strain PN1236]
ATGAAGAGCGGGGTAATTCCTTCTTCAGCGGTCGGTCAAAAAATTAACGAGTGGTACAAATATATCCGGACATTCAGCGT
GCCGGATGCCGAAGTGTTAAAAGCTGAAATCCAGCAGGAATTGAAACACATGCAGCATGATTCCAACTTGCTGCTTTATT
ATTCACTAATGGAATTCCGGCACCAGCTTATGCTGGATTATCTTGAGCCGTTAGAGAAATTAAATATCGAAGACCAGCCA
AGCCTGTCTGAATTATCAAGAAACATTGACAGCAACCAGGCAGATCTCAAAGGGCTGCTCGACTATTACGTGAATTTTTT
TCGCGGGATGTATGAGTTTGATAAGCGGGAATTTATTTCTGCCATTACATACTATAAACAGGCGGAGAAAAAGCTCTCCT
TTGTCGCAGACCATATTGAACGGGCTGAATTCTATTTTAAAATCGCGGAAGCTTATTATTATATGAAGCAAACGTATTTT
TCATTGATTAATATAAAAAACGCTTATGAAATTTACGTGGAGCAGGAAACCTATAATGTGAGAATCATTCAATGCCATTT
CGTCTTCGGGGTCAACCTGATGGATGAAAGAAATTTCGAACAAGCCGCACGCCATTTCAAATTGGCGCTCAATATGGCCC
AAGCGGAACAAAAAGCCCAGCTGGTCGGAAGAGCATACTACAATCTCGGATTATGCTATTACAATCAAGACCTTCTAGAC
CCTGCCATTGATTACTTTGAAAAAGCGGTCTCCACTTTTGAAAGCAGCAGGATCGTCAATTCACTGCCGCAAGCATACTT
TTTAATTACCTTGATTTATTATAAACGGGGAAAACATGATAAAGCTTCGGAATATCACAAGCGGGGCTATGAATATGCTA
AAGAAACAGACGATGCAGACTATGCCGTAAAATTCGAGTTTTTGCAATCCCTATATCAGGATCAGCCCAATGAAGAAGGA
ATCGAACGATGTTTCCAATACCTAAAAAATAAAAATATGTACGCTGATATAGAGGATTTAGCCCTAGAAGTAGCAAAATA
TTACTATGAACAGAAATGGTTTAAACTGTCTGCTTCCTACTTTCTACAAGTTGAAGAGGCAAGAAAACAAATACAAAGGA
GTGAAGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-66)

Tetratricopeptide repeat (TPR_12)

(223-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

99.215

100

0.992
  rapF Bacillus subtilis subsp. subtilis str. 168

57.105

99.476

0.568