Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   VO177_RS08925 Genome accession   NZ_CP141828
Coordinates   1777504..1778148 (+) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain TZS01     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1772504..1783148
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VO177_RS08900 (VO177_08900) - 1772903..1773244 (-) 342 WP_095060627.1 hypothetical protein -
  VO177_RS08905 (VO177_08905) degQ 1773710..1773850 (+) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  VO177_RS08910 (VO177_08910) comQ 1774035..1774994 (+) 960 WP_223204411.1 polyprenyl synthetase family protein Regulator
  VO177_RS08920 (VO177_08920) comP 1775120..1777423 (+) 2304 WP_021495364.1 histidine kinase Regulator
  VO177_RS08925 (VO177_08925) comA 1777504..1778148 (+) 645 WP_003152052.1 response regulator transcription factor Regulator
  VO177_RS08930 (VO177_08930) - 1778170..1778553 (+) 384 WP_007613430.1 hotdog fold thioesterase -
  VO177_RS08935 (VO177_08935) mnhG 1778593..1778967 (-) 375 WP_007613429.1 monovalent cation/H(+) antiporter subunit G -
  VO177_RS08940 (VO177_08940) - 1778951..1779235 (-) 285 WP_003152057.1 Na(+)/H(+) antiporter subunit F1 -
  VO177_RS08945 (VO177_08945) - 1779235..1779711 (-) 477 WP_007408672.1 Na+/H+ antiporter subunit E -
  VO177_RS08950 (VO177_08950) - 1779717..1781198 (-) 1482 WP_021495363.1 Na+/H+ antiporter subunit D -
  VO177_RS08955 (VO177_08955) - 1781191..1781532 (-) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  VO177_RS08960 (VO177_08960) - 1781532..1781963 (-) 432 WP_007613424.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=919958 VO177_RS08925 WP_003152052.1 1777504..1778148(+) (comA) [Bacillus velezensis strain TZS01]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=919958 VO177_RS08925 WP_003152052.1 1777504..1778148(+) (comA) [Bacillus velezensis strain TZS01]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTTGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
TGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864