Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   VO180_RS12415 Genome accession   NZ_CP141826
Coordinates   2611351..2611947 (-) Length   198 a.a.
NCBI ID   WP_229041455.1    Uniprot ID   -
Organism   Bacillus velezensis strain XHA16     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2606351..2616947
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VO180_RS12390 (VO180_12390) mobB 2606727..2607248 (-) 522 WP_007409631.1 molybdopterin-guanine dinucleotide biosynthesis protein B -
  VO180_RS12395 (VO180_12395) glp 2607209..2608501 (-) 1293 WP_015417375.1 gephyrin-like molybdotransferase Glp -
  VO180_RS12400 (VO180_12400) - 2608519..2609538 (-) 1020 WP_007611113.1 molybdopterin-synthase adenylyltransferase MoeB -
  VO180_RS12405 (VO180_12405) - 2609590..2610192 (-) 603 WP_225046246.1 molybdenum cofactor guanylyltransferase -
  VO180_RS12410 (VO180_12410) - 2610338..2611330 (+) 993 WP_007409627.1 hypothetical protein -
  VO180_RS12415 (VO180_12415) rok 2611351..2611947 (-) 597 WP_229041455.1 transcriptional regulator Rok Regulator
  VO180_RS12420 (VO180_12420) - 2612399..2612857 (-) 459 WP_060675395.1 TlpA disulfide reductase family protein -
  VO180_RS12425 (VO180_12425) - 2613146..2613952 (+) 807 WP_015417373.1 mechanosensitive ion channel family protein -
  VO180_RS12430 (VO180_12430) - 2613986..2614231 (-) 246 WP_003154596.1 YkuS family protein -
  VO180_RS12435 (VO180_12435) - 2614292..2615416 (-) 1125 WP_012117444.1 N-acetyldiaminopimelate deacetylase -
  VO180_RS12440 (VO180_12440) dapD 2615487..2616197 (-) 711 WP_007409623.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  VO180_RS12445 (VO180_12445) - 2616279..2616734 (-) 456 WP_033574618.1 flavodoxin -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22521.58 Da        Isoelectric Point: 9.6909

>NTDB_id=919828 VO180_RS12415 WP_229041455.1 2611351..2611947(-) (rok) [Bacillus velezensis strain XHA16]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
AQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETPETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=919828 VO180_RS12415 WP_229041455.1 2611351..2611947(-) (rok) [Bacillus velezensis strain XHA16]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACAGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
GCACAGCCTCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCTGCCGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACATTGAAACGCCACAATG
CAGCGATCAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACACCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

85.567

97.98

0.838