Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   VO180_RS12305 Genome accession   NZ_CP141826
Coordinates   2591166..2591450 (-) Length   94 a.a.
NCBI ID   WP_003154557.1    Uniprot ID   -
Organism   Bacillus velezensis strain XHA16     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2586166..2596450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VO180_RS12285 (VO180_12285) ade 2586272..2588005 (-) 1734 WP_061861425.1 adenine deaminase -
  VO180_RS12290 (VO180_12290) ktrC 2588154..2588819 (-) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  VO180_RS12295 (VO180_12295) - 2588860..2589687 (-) 828 WP_015239773.1 gamma-glutamylcyclotransferase -
  VO180_RS12300 (VO180_12300) - 2589689..2590993 (-) 1305 WP_064108138.1 ATP-binding protein -
  VO180_RS12305 (VO180_12305) abrB 2591166..2591450 (-) 285 WP_003154557.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  VO180_RS12310 (VO180_12310) mreBH 2591721..2592728 (+) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  VO180_RS12315 (VO180_12315) - 2592800..2592934 (+) 135 WP_003154559.1 protein YkpC -
  VO180_RS12320 (VO180_12320) - 2593035..2594267 (+) 1233 WP_007409644.1 aminopeptidase -
  VO180_RS12325 (VO180_12325) - 2594299..2595207 (-) 909 WP_324635887.1 ketopantoate reductase family protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10584.45 Da        Isoelectric Point: 5.2271

>NTDB_id=919827 VO180_RS12305 WP_003154557.1 2591166..2591450(-) (abrB) [Bacillus velezensis strain XHA16]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITPENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=919827 VO180_RS12305 WP_003154557.1 2591166..2591450(-) (abrB) [Bacillus velezensis strain XHA16]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTGAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACGGGGGAAATTACTCCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543