Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   VDS61_RS00040 Genome accession   NZ_CP141812
Coordinates   9506..10018 (+) Length   170 a.a.
NCBI ID   WP_004265848.1    Uniprot ID   A0A0B2XPH3
Organism   Latilactobacillus curvatus strain K285     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4506..15018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VDS61_RS00030 (VDS61_00030) gyrA 6342..8927 (+) 2586 WP_039098084.1 DNA gyrase subunit A -
  VDS61_RS00035 (VDS61_00035) rpsF 9170..9466 (+) 297 WP_004265809.1 30S ribosomal protein S6 -
  VDS61_RS00040 (VDS61_00040) ssb 9506..10018 (+) 513 WP_004265848.1 single-stranded DNA-binding protein Machinery gene
  VDS61_RS00045 (VDS61_00045) rpsR 10049..10288 (+) 240 WP_004265822.1 30S ribosomal protein S18 -
  VDS61_RS00050 (VDS61_00050) - 10535..11458 (+) 924 WP_004271307.1 IS30 family transposase -
  VDS61_RS00055 (VDS61_00055) dnaB 11693..13096 (-) 1404 WP_172821848.1 replicative DNA helicase -
  VDS61_RS00060 (VDS61_00060) rplI 13241..13693 (-) 453 WP_004265788.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18621.16 Da        Isoelectric Point: 4.6856

>NTDB_id=919649 VDS61_RS00040 WP_004265848.1 9506..10018(+) (ssb) [Latilactobacillus curvatus strain K285]
MINRVVLVGRLTRDVDLRYTSSGAAVGTFSIAVNRQFTNANGDREADFINCVIWRKSAENFANFTKKGSLVGVDGRLQTR
NYENQQGQRVYVTEVVVDNFSLLESRTTTEQRQGDGASQNFNNNQSNGSQQSGFTSPQQSGNPSAANNTQADPFANNGQA
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=919649 VDS61_RS00040 WP_004265848.1 9506..10018(+) (ssb) [Latilactobacillus curvatus strain K285]
ATGATTAATCGAGTTGTACTCGTTGGTCGGCTAACACGCGATGTTGACTTACGTTACACTTCTAGTGGTGCTGCTGTTGG
GACTTTCTCAATCGCAGTGAACCGTCAATTCACGAATGCCAATGGTGATCGTGAAGCAGACTTTATCAACTGTGTCATCT
GGCGTAAATCAGCGGAAAATTTCGCTAATTTCACTAAGAAAGGCTCACTAGTCGGAGTTGATGGCCGTCTACAAACGAGA
AATTATGAAAACCAACAAGGTCAACGTGTATACGTAACCGAAGTGGTCGTTGATAACTTCTCATTGTTAGAATCACGGAC
AACAACGGAGCAACGGCAAGGGGATGGCGCAAGCCAAAACTTTAACAACAATCAAAGCAATGGTAGCCAACAATCTGGAT
TTACCAGCCCTCAACAATCGGGTAATCCATCAGCTGCAAATAACACTCAAGCCGATCCATTTGCAAATAATGGTCAAGCA
ATTGATATTTCAGATGATGATTTACCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B2XPH3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

97.059

100

0.971
  ssbA Bacillus subtilis subsp. subtilis str. 168

56

100

0.576
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

62.353

0.371
  ssb Glaesserella parasuis strain SC1401

33.155

100

0.365