Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB9   Type   Machinery gene
Locus tag   VA243_RS05430 Genome accession   NZ_CP141774
Coordinates   1121756..1122718 (-) Length   320 a.a.
NCBI ID   WP_324714411.1    Uniprot ID   -
Organism   Helicobacter pylori strain P07353     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1116756..1127718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VA243_RS05410 - 1117061..1117993 (-) 933 WP_324714407.1 GDP-L-fucose synthase -
  VA243_RS05415 gmd 1117986..1119131 (-) 1146 WP_324714408.1 GDP-mannose 4,6-dehydratase -
  VA243_RS05420 - 1119145..1120557 (-) 1413 WP_324714410.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  VA243_RS05425 comB10 1120627..1121763 (-) 1137 WP_212776919.1 DNA type IV secretion system protein ComB10 Machinery gene
  VA243_RS05430 comB9 1121756..1122718 (-) 963 WP_324714411.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  VA243_RS05435 comB8 1122718..1123461 (-) 744 WP_324714412.1 virB8 family protein Machinery gene
  VA243_RS05440 comB7 1123458..1123583 (-) 126 WP_001217874.1 hypothetical protein Machinery gene
  VA243_RS05445 comB6 1123599..1124654 (-) 1056 WP_324714413.1 P-type conjugative transfer protein TrbL Machinery gene
  VA243_RS05450 - 1124660..1125655 (-) 996 WP_324715122.1 PDZ domain-containing protein -
  VA243_RS05455 - 1125655..1125948 (-) 294 WP_000347917.1 YbaB/EbfC family nucleoid-associated protein -
  VA243_RS05460 panD 1125959..1126309 (-) 351 WP_324714415.1 aspartate 1-decarboxylase -

Sequence

Protein


Download         Length: 320 a.a.        Molecular weight: 36942.59 Da        Isoelectric Point: 9.4585

>NTDB_id=919406 VA243_RS05430 WP_324714411.1 1121756..1122718(-) (comB9) [Helicobacter pylori strain P07353]
MRKVLYALVGFLLAFSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNVDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENTLEKAPTNNKPLKEEKEETKEEETIIIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLWICSKKSK
LSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFVKKGKDE

Nucleotide


Download         Length: 963 bp        

>NTDB_id=919406 VA243_RS05430 WP_324714411.1 1121756..1122718(-) (comB9) [Helicobacter pylori strain P07353]
ATGCGTAAGGTTTTATACGCTCTTGTGGGCTTTTTGTTGGCTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCAGCGAATTTAAACCACCCTATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAATGTTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATTTTAGAAAG
TAACGATCGCATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCCAATATCAGCGTGATTGATAATGAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCTAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCCAACGCTTTTATGAAACCGCAAAACAAAGAAAATACCCTTGAAAAGGCCCCCACAAACAACAAACCCTTAAA
AGAAGAAAAAGAAGAAACTAAAGAAGAGGAGACTATAATTATCGGCGATAACACTAATGCAATGAAAATCGTTAAAAAAG
ACATTCAAAAAGGCTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTGTGGATTTGTTCTAAAAAATCCAAA
CTCTCTTTGATGCCTGAAGAAATTTTTAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAACTAGCACTCTCTAA
ATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGGGCGATTACATTATCGCTG
AAGATGTCTCGGCTAAATGGACTTTAAGATTAGGTAAGGACTATTTGTGTATTCGTTTTGTCAAAAAGGGTAAAGATGAA
TAA

Domains

Predicted by InterproScan.

Conjugal transfer protein (CagX)

(62-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB9 Helicobacter pylori P1

92.945

100

0.947