Detailed information NTG0919405

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: VA243_RS05425
• Genome accession: NZ_CP141774
• Coordinates: 1120627..1121763 (-)
• Length: 378 a.a.
• NCBI ID: WP_212776919.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain P07353
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1115627..1126763

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VA243_RS05405	hypE	1115724..1116722 (+)	999	WP_324714406.1	hydrogenase expression/formation protein HypE	-
VA243_RS05410	-	1117061..1117993 (-)	933	WP_324714407.1	GDP-L-fucose synthase	-
VA243_RS05415	gmd	1117986..1119131 (-)	1146	WP_324714408.1	GDP-mannose 4,6-dehydratase	-
VA243_RS05420	-	1119145..1120557 (-)	1413	WP_324714410.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
VA243_RS05425	comB10	1120627..1121763 (-)	1137	WP_212776919.1	DNA type IV secretion system protein ComB10	Machinery gene
VA243_RS05430	comB9	1121756..1122718 (-)	963	WP_324714411.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
VA243_RS05435	comB8	1122718..1123461 (-)	744	WP_324714412.1	virB8 family protein	Machinery gene
VA243_RS05440	comB7	1123458..1123583 (-)	126	WP_001217874.1	hypothetical protein	Machinery gene
VA243_RS05445	comB6	1123599..1124654 (-)	1056	WP_324714413.1	P-type conjugative transfer protein TrbL	Machinery gene
VA243_RS05450	-	1124660..1125655 (-)	996	WP_324715122.1	PDZ domain-containing protein	-
VA243_RS05455	-	1125655..1125948 (-)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
VA243_RS05460	panD	1125959..1126309 (-)	351	WP_324714415.1	aspartate 1-decarboxylase	-

Sequence

Protein

• Length: 378 a.a.
• Molecular weight: 42007.56 Da
• Isoelectric Point: 9.9227

>NTDB_id=919405 VA243_RS05425 WP_212776919.1 1120627..1121763(-) (comB10) [Helicobacter pylori strain P07353]
MNKWIKGALVFVGGFATITTISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFTSPPIDLKANTTPPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFASMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPKENEVIAEFLK

Nucleotide

• Length: 1137 bp

>NTDB_id=919405 VA243_RS05425 WP_212776919.1 1120627..1121763(-) (comB10) [Helicobacter pylori strain P07353]
ATGAATAAGTGGATTAAGGGGGCGCTTGTTTTTGTAGGGGGTTTTGCAACGATTACAACAATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCCTAAATAACCAACCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGATTACACCT
TCACCCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCTTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTACTAGCCCTCCCATAGATTTAAAAGC
AAACACAACCCCCCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTAGCCTCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGGATCGATGGTTTTACTAACCTTAAAGAA
AAAGACATCGCCACTAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTAATCACGCC
TATTTCTAGCCAGATTGCCGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCGAGCATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAACAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTAGT
GGGAGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTTCCGTTACTGCTTTCTACTCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAATAGGGGCAATAAAGAAGGAGCTACCAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCCAAAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (173-364)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	95.767	100	0.958