Detailed information NTG0919409

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: VA243_RS05445
• Genome accession: NZ_CP141774
• Coordinates: 1123599..1124654 (-)
• Length: 351 a.a.
• NCBI ID: WP_324714413.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain P07353
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1118599..1129654

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VA243_RS05420	-	1119145..1120557 (-)	1413	WP_324714410.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
VA243_RS05425	comB10	1120627..1121763 (-)	1137	WP_212776919.1	DNA type IV secretion system protein ComB10	Machinery gene
VA243_RS05430	comB9	1121756..1122718 (-)	963	WP_324714411.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
VA243_RS05435	comB8	1122718..1123461 (-)	744	WP_324714412.1	virB8 family protein	Machinery gene
VA243_RS05440	comB7	1123458..1123583 (-)	126	WP_001217874.1	hypothetical protein	Machinery gene
VA243_RS05445	comB6	1123599..1124654 (-)	1056	WP_324714413.1	P-type conjugative transfer protein TrbL	Machinery gene
VA243_RS05450	-	1124660..1125655 (-)	996	WP_324715122.1	PDZ domain-containing protein	-
VA243_RS05455	-	1125655..1125948 (-)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
VA243_RS05460	panD	1125959..1126309 (-)	351	WP_324714415.1	aspartate 1-decarboxylase	-
VA243_RS05465	-	1126299..1128521 (-)	2223	WP_324714416.1	ATP-dependent Clp protease ATP-binding subunit	-
VA243_RS05470	-	1128521..1128796 (-)	276	WP_000784960.1	ATP-dependent Clp protease adaptor ClpS	-
VA243_RS05475	-	1128816..1129229 (-)	414	WP_001023005.1	universal stress protein	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39875.88 Da
• Isoelectric Point: 8.8165

>NTDB_id=919409 VA243_RS05445 WP_324714413.1 1123599..1124654(-) (comB6) [Helicobacter pylori strain P07353]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMIAQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVVCLKKCFALGFYKPFLLLVGFLNVSVTKVLIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPASSPISTSTRESATKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=919409 VA243_RS05445 WP_324714413.1 1123599..1124654(-) (comB6) [Helicobacter pylori strain P07353]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTTTAACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCTAGCGCGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCGCGCAAAGTCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCATGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGTGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATTATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTTGTGTGCTTAAAAAAATGTTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGTTTTAATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCCAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTTCTTCTCCTATTTCTACTTCTACAAGAGAAAGCGCCACTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAG

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	96.866	100	0.969