Detailed information NTG0919379

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: VA210_RS02825
• Genome accession: NZ_CP141773
• Coordinates: 596091..597227 (-)
• Length: 378 a.a.
• NCBI ID: WP_324714061.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain P08205
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 591091..602227

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VA210_RS02805	hypE	591275..592273 (+)	999	WP_324714058.1	hydrogenase expression/formation protein HypE	-
VA210_RS02810	-	592525..593457 (-)	933	WP_154461861.1	GDP-L-fucose synthase family protein	-
VA210_RS02815	gmd	593450..594595 (-)	1146	WP_324714059.1	GDP-mannose 4,6-dehydratase	-
VA210_RS02820	-	594609..596021 (-)	1413	WP_324714060.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
VA210_RS02825	comB10	596091..597227 (-)	1137	WP_324714061.1	DNA type IV secretion system protein ComB10	Machinery gene
VA210_RS02830	comB9	597220..598182 (-)	963	WP_324714062.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
VA210_RS02835	comB8	598182..598925 (-)	744	WP_221004244.1	type IV secretion system protein	Machinery gene
VA210_RS02840	comB7	598922..599047 (-)	126	WP_001217874.1	hypothetical protein	Machinery gene
VA210_RS02845	comB6	599063..600118 (-)	1056	WP_324714182.1	P-type conjugative transfer protein TrbL	Machinery gene
VA210_RS02850	-	600124..601119 (-)	996	WP_324714183.1	PDZ domain-containing protein	-
VA210_RS02855	-	601119..601412 (-)	294	WP_000347916.1	YbaB/EbfC family nucleoid-associated protein	-
VA210_RS02860	panD	601423..601773 (-)	351	WP_000142208.1	aspartate 1-decarboxylase	-

Sequence

Protein

• Length: 378 a.a.
• Molecular weight: 42070.66 Da
• Isoelectric Point: 9.8461

>NTDB_id=919379 VA210_RS02825 WP_324714061.1 596091..597227(-) (comB10) [Helicobacter pylori strain P08205]
MNKWIKGALIFVGGFATIVTISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFTSPPIDLKANTTPPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPKEDEVIAEFLK

Nucleotide

• Length: 1137 bp

>NTDB_id=919379 VA210_RS02825 WP_324714061.1 596091..597227(-) (comB10) [Helicobacter pylori strain P08205]
ATGAATAAGTGGATTAAGGGGGCGCTTATTTTTGTAGGGGGTTTTGCAACGATTGTAACAATTTCTTTAATCTATCACCA
AAAGCCAAAAGCCCCCCTAAATAACCAACCCAATCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCTTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTACTAGCCCTCCCATAGATTTAAAAGC
AAACACAACCCCCCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTAGCCTCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGGATCGATGGTTTTACCAACCTTAAAGAA
AAAGACATCGCCACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATTGCCGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATTATCACCCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTATTGCTTTCTACTCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAATAGGGGCAATAAAGAAGGAGCCACCAATTTTTTTGGGGATTATCTTTTATTGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTAGTCAATCAAATTTTAAGAGATAAGAGCAAAATCGCTCCTATTGTAGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCCAAAGAGGATGAAGTCATCG
CTGAGTTTTTGAAGTGA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (173-364)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	95.238	100	0.952