Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   VA210_RS02835 Genome accession   NZ_CP141773
Coordinates   598182..598925 (-) Length   247 a.a.
NCBI ID   WP_221004244.1    Uniprot ID   -
Organism   Helicobacter pylori strain P08205     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 593182..603925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VA210_RS02815 gmd 593450..594595 (-) 1146 WP_324714059.1 GDP-mannose 4,6-dehydratase -
  VA210_RS02820 - 594609..596021 (-) 1413 WP_324714060.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  VA210_RS02825 comB10 596091..597227 (-) 1137 WP_324714061.1 DNA type IV secretion system protein ComB10 Machinery gene
  VA210_RS02830 comB9 597220..598182 (-) 963 WP_324714062.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  VA210_RS02835 comB8 598182..598925 (-) 744 WP_221004244.1 type IV secretion system protein Machinery gene
  VA210_RS02840 comB7 598922..599047 (-) 126 WP_001217874.1 hypothetical protein Machinery gene
  VA210_RS02845 comB6 599063..600118 (-) 1056 WP_324714182.1 P-type conjugative transfer protein TrbL Machinery gene
  VA210_RS02850 - 600124..601119 (-) 996 WP_324714183.1 PDZ domain-containing protein -
  VA210_RS02855 - 601119..601412 (-) 294 WP_000347916.1 YbaB/EbfC family nucleoid-associated protein -
  VA210_RS02860 panD 601423..601773 (-) 351 WP_000142208.1 aspartate 1-decarboxylase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28714.94 Da        Isoelectric Point: 8.9546

>NTDB_id=919381 VA210_RS02835 WP_221004244.1 598182..598925(-) (comB8) [Helicobacter pylori strain P08205]
MKEKPFNSEQLIYLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIATKLMNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKVTRYSITEI
APTNRGD

Nucleotide


Download         Length: 744 bp        

>NTDB_id=919381 VA210_RS02835 WP_221004244.1 598182..598925(-) (comB8) [Helicobacter pylori strain P08205]
ATGAAGGAAAAGCCTTTCAATAGCGAGCAATTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAATGATTTGGACATGCAAAGCGTGTTTAGATTAGAGAGGAACCGCTTGAAAATCGCTT
ATAAACTCTTAGGCTTGATGAGTTTTATCGCTCTTGTTTTAGCGATTGTTTTAATCAGTGTTCTACCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGCATTAATCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAGGATTTGATCAAAACGCAAAACAGCATTTAT
GCGCAAAGCCATTTGGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
TTCTATTGCGACTAAACTCATGAATGAAAACAAGCTGGTGTATGAAAAGCGTTATAAAATCGTGCTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAGTTACTCGCTACAGCATCACTGAAATC
GCGCCGACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

96.761

100

0.968