Detailed information NTG0919383

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: VA210_RS02845
• Genome accession: NZ_CP141773
• Coordinates: 599063..600118 (-)
• Length: 351 a.a.
• NCBI ID: WP_324714182.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain P08205
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 594063..605118

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VA210_RS02820	-	594609..596021 (-)	1413	WP_324714060.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
VA210_RS02825	comB10	596091..597227 (-)	1137	WP_324714061.1	DNA type IV secretion system protein ComB10	Machinery gene
VA210_RS02830	comB9	597220..598182 (-)	963	WP_324714062.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
VA210_RS02835	comB8	598182..598925 (-)	744	WP_221004244.1	type IV secretion system protein	Machinery gene
VA210_RS02840	comB7	598922..599047 (-)	126	WP_001217874.1	hypothetical protein	Machinery gene
VA210_RS02845	comB6	599063..600118 (-)	1056	WP_324714182.1	P-type conjugative transfer protein TrbL	Machinery gene
VA210_RS02850	-	600124..601119 (-)	996	WP_324714183.1	PDZ domain-containing protein	-
VA210_RS02855	-	601119..601412 (-)	294	WP_000347916.1	YbaB/EbfC family nucleoid-associated protein	-
VA210_RS02860	panD	601423..601773 (-)	351	WP_000142208.1	aspartate 1-decarboxylase	-
VA210_RS02865	-	601763..603985 (-)	2223	WP_324714063.1	ATP-dependent Clp protease ATP-binding subunit	-
VA210_RS02870	-	603985..604260 (-)	276	WP_000784917.1	ATP-dependent Clp protease adaptor ClpS	-
VA210_RS02875	-	604281..604694 (-)	414	WP_001023005.1	universal stress protein	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39876.83 Da
• Isoelectric Point: 8.8165

>NTDB_id=919383 VA210_RS02845 WP_324714182.1 599063..600118(-) (comB6) [Helicobacter pylori strain P08205]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLNHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPASSPISTSTRESATKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=919383 VA210_RS02845 WP_324714182.1 599063..600118(-) (comB6) [Helicobacter pylori strain P08205]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTTTAACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCTAGCGCGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCCAACATGATCACACAAAGCCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAACCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATTATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTTGCGTGCTTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGCTGG
TGGGGTTTTTGAACGTGTCGGTTACTAAGGCTTTAATAGACGCGCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAGCTCGCCACCAATTTGAGCGCTAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTTCTTCTCCTATTTCTACTTCTACAAGAGAAAGCGCCACTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	96.581	100	0.966