Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   VA613_RS02500 Genome accession   NZ_CP141769
Coordinates   514461..514937 (+) Length   158 a.a.
NCBI ID   WP_324780287.1    Uniprot ID   -
Organism   Thiobacillus sedimenti strain SCUT-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 509461..519937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VA613_RS02490 (VA613_02490) uvrA 510127..512949 (-) 2823 WP_324780286.1 excinuclease ABC subunit UvrA -
  VA613_RS02495 (VA613_02495) - 513046..514407 (+) 1362 WP_324781209.1 MFS transporter -
  VA613_RS02500 (VA613_02500) ssb 514461..514937 (+) 477 WP_324780287.1 single-stranded DNA-binding protein Machinery gene
  VA613_RS02505 (VA613_02505) - 515081..517081 (+) 2001 WP_407702877.1 TonB-dependent receptor plug domain-containing protein -
  VA613_RS02510 (VA613_02510) - 517213..517473 (+) 261 WP_324780289.1 FmdB family zinc ribbon protein -
  VA613_RS02515 (VA613_02515) - 517542..518144 (+) 603 WP_324780290.1 DUF502 domain-containing protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17207.25 Da        Isoelectric Point: 5.9490

>NTDB_id=919297 VA613_RS02500 WP_324780287.1 514461..514937(+) (ssb) [Thiobacillus sedimenti strain SCUT-2]
MASVNKVILVGNLGRDPEMRYLPSGEAVANLAIATTDKYKDKSGQMVEATEWHRVSFFGRTAEVCGQYLKKGSQVYVEGS
IRTRKYTDKDGVEKYSTEIRGDRMQMLGSRSGGGMAEMDEGGYAPQSAPRSQPRASAPAPAQRPAGSGFDDMDDDIPF

Nucleotide


Download         Length: 477 bp        

>NTDB_id=919297 VA613_RS02500 WP_324780287.1 514461..514937(+) (ssb) [Thiobacillus sedimenti strain SCUT-2]
ATGGCATCCGTCAACAAAGTGATTCTGGTCGGCAACCTGGGGCGCGACCCCGAAATGCGGTATCTGCCGAGCGGAGAAGC
GGTCGCCAACCTCGCCATCGCCACCACCGACAAGTACAAGGACAAGAGCGGCCAGATGGTCGAGGCGACCGAATGGCACC
GCGTCAGCTTTTTCGGGCGCACCGCCGAAGTGTGCGGGCAATACCTGAAGAAGGGCAGCCAGGTCTACGTCGAGGGCAGC
ATCCGCACCCGCAAGTACACCGACAAGGACGGGGTCGAGAAATACTCGACCGAGATCCGCGGCGACCGCATGCAGATGCT
GGGAAGCCGCAGCGGCGGCGGCATGGCCGAAATGGACGAGGGCGGCTATGCGCCGCAGTCCGCGCCGCGCAGCCAGCCGC
GTGCCAGTGCGCCGGCGCCCGCGCAGCGCCCGGCCGGCAGCGGTTTCGACGACATGGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.718

100

0.557
  ssb Glaesserella parasuis strain SC1401

48.889

100

0.557
  ssb Neisseria gonorrhoeae MS11

47.977

100

0.525
  ssb Neisseria meningitidis MC58

45.087

100

0.494