Detailed information    

insolico Bioinformatically predicted

Overview

Name   ideA   Type   Regulator
Locus tag   ABU640_RS10775 Genome accession   NZ_CP161854
Coordinates   2388354..2389028 (+) Length   224 a.a.
NCBI ID   WP_048608563.1    Uniprot ID   A0A0M0HVE7
Organism   Vibrio cholerae strain C3616     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 2383354..2394028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABU640_RS10740 (ABU640_10740) - 2383961..2384089 (-) 129 WP_001260374.1 type VI secretion protein -
  ABU640_RS10745 (ABU640_10745) - 2384355..2384633 (+) 279 WP_000015696.1 tyrosine-type recombinase/integrase -
  ABU640_RS10750 (ABU640_10750) - 2384863..2384985 (-) 123 WP_001297045.1 hypothetical protein -
  ABU640_RS10755 (ABU640_10755) cadR 2385088..2385495 (-) 408 WP_053409935.1 Cd(II)/Pb(II)-responsive transcriptional regulator -
  ABU640_RS10760 (ABU640_10760) - 2385591..2386487 (+) 897 WP_053409936.1 cation transporter -
  ABU640_RS10765 (ABU640_10765) lspA 2386491..2387003 (+) 513 WP_003821921.1 signal peptidase II -
  ABU640_RS10770 (ABU640_10770) - 2387025..2388312 (+) 1288 Protein_2087 ISL3 family transposase -
  ABU640_RS10775 (ABU640_10775) ideA 2388354..2389028 (+) 675 WP_048608563.1 endonuclease Regulator
  ABU640_RS10780 (ABU640_10780) - 2389437..2391476 (-) 2040 WP_004249372.1 ATP-binding protein -
  ABU640_RS10785 (ABU640_10785) - 2391473..2392891 (-) 1419 WP_004249371.1 SIR2 family protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 26077.09 Da        Isoelectric Point: 7.2404

>NTDB_id=919261 ABU640_RS10775 WP_048608563.1 2388354..2389028(+) (ideA) [Vibrio cholerae strain C3616]
MKSVYPFFIALFAIPAIAEHPTSFSQAKRFAREIYQDNQSTFYCGCSYSNDGAIDAASCGYEPRKQPKRGERLEWEHVVS
AWEIGHQRQCWQNGGRRNCEKNDPEFSKMVSDLHNLVPSVGELNGDRSNFRFGMIPNEPRSYGQCDFEVDFKDRRAEPPA
NRQGDIARIYFYMRDQYGLRLSRQQTQLFEAWSRMDPVDEWEKVRDFKIKTIQGNSNCHVSNSC

Nucleotide


Download         Length: 675 bp        

>NTDB_id=919261 ABU640_RS10775 WP_048608563.1 2388354..2389028(+) (ideA) [Vibrio cholerae strain C3616]
ATTAAATCCGTATACCCTTTCTTTATAGCGTTATTCGCTATACCTGCAATTGCAGAACACCCCACATCGTTCAGTCAGGC
AAAACGATTTGCCCGAGAAATTTACCAAGACAACCAGAGTACGTTTTACTGTGGATGTAGCTATAGCAATGATGGTGCGA
TTGATGCTGCATCTTGCGGATATGAACCAAGAAAGCAACCGAAACGAGGTGAACGCTTAGAGTGGGAACATGTAGTCTCA
GCTTGGGAAATTGGCCATCAACGCCAATGCTGGCAAAATGGTGGTCGTCGGAACTGCGAAAAGAATGATCCTGAGTTTTC
TAAAATGGTTTCGGATCTCCATAACCTCGTACCATCTGTAGGAGAGCTCAATGGGGATAGGTCAAATTTTCGATTTGGCA
TGATTCCGAATGAACCAAGATCCTATGGTCAATGTGATTTCGAAGTTGATTTCAAAGACCGTCGAGCAGAACCACCAGCT
AACCGTCAGGGTGATATTGCTAGAATTTATTTCTACATGCGAGATCAATACGGCCTAAGACTCAGTAGGCAACAAACTCA
GCTATTTGAAGCTTGGTCAAGAATGGACCCTGTTGACGAATGGGAAAAAGTGCGTGATTTTAAGATTAAAACTATTCAAG
GTAACTCTAACTGCCATGTGTCAAATAGCTGTTAA

Domains

Predicted by InterProScan.

Endonuclease I (Endonuclease_1)

(50-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M0HVE7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ideA Vibrio cholerae O1 str. 2010EL-1786

92.76

98.661

0.915
  dns Vibrio parahaemolyticus RIMD 2210633

52.381

100

0.54
  dns Aliivibrio fischeri ES114

52.423

100

0.531
  dns Vibrio cholerae strain A1552

50.661

100

0.513
  dns Campylobacter jejuni RM1221

37.674

95.982

0.362