Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   VNN28_RS01200 Genome accession   NZ_CP141725
Coordinates   241818..242822 (-) Length   334 a.a.
NCBI ID   WP_338997718.1    Uniprot ID   -
Organism   Lactococcus formosensis strain M03102409 EE5d7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 236818..247822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN28_RS01185 (VNN28_01185) - 238340..239248 (-) 909 WP_338997717.1 peptidyl-prolyl cis-trans isomerase -
  VNN28_RS01190 (VNN28_01190) - 239346..240029 (-) 684 WP_165713194.1 O-methyltransferase -
  VNN28_RS01195 (VNN28_01195) pepF 240029..241834 (-) 1806 WP_213495450.1 oligoendopeptidase F Regulator
  VNN28_RS01200 (VNN28_01200) coiA 241818..242822 (-) 1005 WP_338997718.1 competence protein CoiA family protein Machinery gene
  VNN28_RS01205 (VNN28_01205) - 242897..243997 (-) 1101 WP_165713191.1 YdcF family protein -
  VNN28_RS01210 (VNN28_01210) - 244075..245496 (-) 1422 WP_017368901.1 NCS2 family permease -
  VNN28_RS01215 (VNN28_01215) - 245859..246683 (+) 825 WP_213495453.1 HAD family hydrolase -
  VNN28_RS01220 (VNN28_01220) - 246733..247437 (-) 705 WP_165711385.1 Bax inhibitor-1/YccA family protein -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 39899.81 Da        Isoelectric Point: 8.4050

>NTDB_id=918967 VNN28_RS01200 WP_338997718.1 241818..242822(-) (coiA) [Lactococcus formosensis strain M03102409 EE5d7]
MLNALDKDGNTINLFDNKPINPPFYCPACKSSLRLKRGKIKIPHFAHISLQNCDSWSESESAQHLGLKLSLYQWLKEKEK
VELEKYVPEIKQTADLLVNDKLAIEIQCSPLSLQRLEERTVSYKEKGYYVLWLQGRDLWLKKTLSSLQKNLLYYSVERGF
YFWELDWDRKKLRLKSLIHQDLKGRLICLTEEFDFFQESLLELLRQPFLKGENLSIDVPEQEELQFFIQKQLYYQVPKWI
KVQEKYYEQGKNLLDLNWKKCYWGPPGLNLLTFGFVNESRESFFQVDTSLEKYYQGFYESFQSQEHERLHTPSYYAIIKD
KNKVKNGEWHGKKT

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=918967 VNN28_RS01200 WP_338997718.1 241818..242822(-) (coiA) [Lactococcus formosensis strain M03102409 EE5d7]
ATGTTGAATGCATTGGATAAAGACGGAAATACAATTAATCTCTTTGATAATAAACCCATTAATCCCCCTTTTTATTGCCC
AGCTTGCAAGTCGTCCCTGCGTTTAAAAAGAGGAAAGATAAAAATACCTCACTTTGCGCACATATCTTTACAAAATTGTG
ATTCTTGGAGTGAAAGCGAATCTGCACAACATCTGGGTTTAAAACTTAGCTTATACCAATGGCTTAAGGAAAAAGAGAAA
GTAGAGCTAGAAAAATATGTGCCAGAGATTAAGCAAACGGCTGATTTGTTAGTGAATGATAAACTTGCCATCGAAATACA
GTGTTCGCCACTCTCTTTACAACGTTTAGAAGAGAGAACGGTAAGCTACAAAGAAAAGGGATATTATGTACTTTGGCTTC
AAGGAAGGGATTTGTGGCTCAAGAAGACCTTATCATCGCTACAGAAAAATTTGCTCTATTATTCAGTTGAGCGAGGTTTT
TACTTTTGGGAGTTAGATTGGGACAGAAAGAAGCTACGTTTGAAATCATTGATTCATCAGGATTTAAAAGGTCGACTGAT
ATGTCTTACGGAAGAGTTTGATTTTTTCCAAGAGAGTCTCTTAGAACTCTTACGTCAGCCTTTTCTCAAAGGAGAAAATC
TTAGTATAGATGTGCCAGAGCAAGAAGAGTTACAGTTTTTTATTCAAAAACAACTGTATTATCAAGTGCCAAAATGGATT
AAAGTGCAAGAAAAATATTATGAACAGGGTAAAAATTTGTTAGACCTCAACTGGAAGAAATGTTACTGGGGACCTCCAGG
ACTAAACTTATTGACCTTTGGCTTTGTAAATGAAAGTCGAGAAAGTTTTTTTCAAGTGGACACTTCCTTAGAAAAATATT
ATCAAGGCTTCTACGAAAGTTTTCAGTCACAAGAACATGAAAGACTGCATACACCAAGCTACTATGCTATAATTAAAGAT
AAAAATAAAGTGAAAAACGGAGAATGGCATGGCAAAAAAACGTGA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Lactococcus lactis subsp. cremoris KW2

51.524

98.204

0.506
  coiA Streptococcus pneumoniae Rx1

41.463

98.204

0.407
  coiA Streptococcus pneumoniae D39

41.463

98.204

0.407
  coiA Streptococcus pneumoniae R6

41.463

98.204

0.407
  coiA Streptococcus pneumoniae TIGR4

41.159

98.204

0.404
  coiA Streptococcus mitis NCTC 12261

41.159

98.204

0.404