Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   VNN53_RS02990 Genome accession   NZ_CP141720
Coordinates   607608..608024 (-) Length   138 a.a.
NCBI ID   WP_242359187.1    Uniprot ID   -
Organism   Lactococcus garvieae strain CAHFS22OV20.5B5     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 602608..613024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN53_RS02970 (VNN53_02970) - 604889..605758 (+) 870 WP_141921062.1 RluA family pseudouridine synthase -
  VNN53_RS02975 (VNN53_02975) - 605844..606689 (-) 846 WP_003133722.1 metal ABC transporter solute-binding protein, Zn/Mn family -
  VNN53_RS02980 (VNN53_02980) comYF 606922..607362 (-) 441 WP_014024179.1 competence type IV pilus minor pilin ComGF Machinery gene
  VNN53_RS02985 (VNN53_02985) comGE 607343..607576 (-) 234 WP_260603768.1 competence type IV pilus minor pilin ComGE -
  VNN53_RS02990 (VNN53_02990) comGD 607608..608024 (-) 417 WP_242359187.1 competence type IV pilus minor pilin ComGD Machinery gene
  VNN53_RS02995 (VNN53_02995) comYC 607999..608304 (-) 306 WP_016171026.1 competence type IV pilus major pilin ComGC Machinery gene
  VNN53_RS03000 (VNN53_03000) comGB 608323..609342 (-) 1020 WP_260603779.1 competence type IV pilus assembly protein ComGB Machinery gene
  VNN53_RS03005 (VNN53_03005) comGA 609281..610225 (-) 945 WP_141921120.1 competence type IV pilus ATPase ComGA Machinery gene
  VNN53_RS03010 (VNN53_03010) rpsU 610413..610589 (-) 177 WP_003134539.1 30S ribosomal protein S21 -
  VNN53_RS03015 (VNN53_03015) guaB 610712..612193 (-) 1482 WP_003133714.1 IMP dehydrogenase -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 15834.54 Da        Isoelectric Point: 10.0791

>NTDB_id=918850 VNN53_RS02990 WP_242359187.1 607608..608024(-) (comGD) [Lactococcus garvieae strain CAHFS22OV20.5B5]
MKNVMYRIKALTLLESLLVLFLCSFVLFLFSGSVKQSVRIARAEIFILQFERLYKDTQRMAGLKGQQQTLSASNGALYSQ
EEMLKIPEEAEINDFSITFDQKSGNSSLQKITIFLPYQKKTISYQLEIGSGKYKKRIT

Nucleotide


Download         Length: 417 bp        

>NTDB_id=918850 VNN53_RS02990 WP_242359187.1 607608..608024(-) (comGD) [Lactococcus garvieae strain CAHFS22OV20.5B5]
ATGAAAAACGTAATGTACCGAATTAAAGCCTTGACTTTACTGGAGAGTTTACTCGTTCTTTTCCTATGCTCTTTTGTTCT
TTTTCTATTTTCAGGTTCGGTCAAACAAAGTGTGAGGATAGCACGCGCAGAGATTTTTATTTTACAATTTGAACGTCTTT
ATAAGGATACTCAACGCATGGCGGGACTAAAGGGACAGCAACAGACGTTGAGTGCGAGCAATGGTGCACTCTATAGCCAA
GAGGAAATGCTGAAAATCCCAGAGGAGGCTGAAATAAATGATTTCTCTATTACTTTTGATCAAAAATCAGGCAATTCGAG
CCTACAAAAAATCACAATATTTCTTCCCTATCAGAAAAAAACAATCTCTTATCAATTGGAGATTGGAAGCGGAAAATATA
AGAAAAGAATCACTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Lactococcus lactis subsp. cremoris KW2

49.275

100

0.493
  comYD Streptococcus mutans UA140

42.424

95.652

0.406
  comYD Streptococcus mutans UA159

42.424

95.652

0.406
  comGD/cglD Streptococcus mitis SK321

39.535

93.478

0.37
  comGD/cglD Streptococcus pneumoniae TIGR4

38.76

93.478

0.362
  comYD Streptococcus gordonii str. Challis substr. CH1

38.168

94.928

0.362