Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   VNN53_RS01170 Genome accession   NZ_CP141720
Coordinates   238880..239884 (-) Length   334 a.a.
NCBI ID   WP_338962058.1    Uniprot ID   -
Organism   Lactococcus garvieae strain CAHFS22OV20.5B5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 233880..244884
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN53_RS01155 (VNN53_01155) - 235402..236310 (-) 909 WP_265150336.1 peptidyl-prolyl cis-trans isomerase -
  VNN53_RS01160 (VNN53_01160) - 236408..237091 (-) 684 WP_004258974.1 O-methyltransferase -
  VNN53_RS01165 (VNN53_01165) pepF 237091..238896 (-) 1806 WP_338962055.1 oligoendopeptidase F Regulator
  VNN53_RS01170 (VNN53_01170) coiA 238880..239884 (-) 1005 WP_338962058.1 competence protein CoiA family protein Machinery gene
  VNN53_RS01175 (VNN53_01175) - 239959..241059 (-) 1101 WP_338962060.1 YdcF family protein -
  VNN53_RS01180 (VNN53_01180) - 241136..242557 (-) 1422 WP_014024380.1 NCS2 family permease -
  VNN53_RS01185 (VNN53_01185) - 242914..243738 (+) 825 WP_014024379.1 Cof-type HAD-IIB family hydrolase -
  VNN53_RS01190 (VNN53_01190) - 243792..244496 (-) 705 WP_004258993.1 Bax inhibitor-1/YccA family protein -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 39841.66 Da        Isoelectric Point: 8.0831

>NTDB_id=918830 VNN53_RS01170 WP_338962058.1 238880..239884(-) (coiA) [Lactococcus garvieae strain CAHFS22OV20.5B5]
MLIALDKDGKTINLLDSTSINGPFYCPACKTPLRLKKGKIKIPHFAHVSLQNCDSWSENESAQHLGLKLSLYQWFKEREK
VELEKYVPEIKQTADLLVNDKLAIEIQCSPLSLQRLEERTVSYKEMGYYVLWLQGRGLWLKNTLSSLQKNLLYYSAERGF
YFWELDWNRKKLRLKSLIYQDLKGRPIYLTEEFDFFQESLLDLLRQPFRKGKTLSLDVPKQEELQLFVQKQLYYQVPKWL
KVQEKYYEQGRNLLDLNWKKSYWSPPGLNLLTFDFADDTRESFFQVDISLEEYYHSFYESFQLQEHETLHTPSFYAIIKD
KNKVENGEWNGKKT

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=918830 VNN53_RS01170 WP_338962058.1 238880..239884(-) (coiA) [Lactococcus garvieae strain CAHFS22OV20.5B5]
ATGTTAATAGCTTTGGATAAAGACGGAAAAACAATAAATCTTCTGGACAGCACTTCAATTAATGGCCCTTTTTATTGCCC
GGCCTGTAAGACGCCCCTTCGTTTAAAAAAAGGGAAGATAAAAATTCCTCACTTTGCCCATGTATCTTTGCAAAATTGTG
ACTCTTGGAGTGAAAATGAATCTGCACAACACTTGGGCTTAAAACTCAGCTTATATCAGTGGTTTAAGGAAAGAGAGAAA
GTAGAACTGGAAAAGTACGTGCCAGAGATTAAGCAAACGGCTGATTTGTTAGTGAATGATAAACTTGCTATTGAAATACA
GTGCTCGCCCCTCTCTTTGCAACGTTTAGAAGAGAGAACGGTCAGTTACAAAGAAATGGGGTATTATGTACTTTGGCTTC
AAGGGAGGGGCTTGTGGCTTAAGAATACTCTATCTTCTTTGCAGAAAAATTTGCTTTATTATTCAGCAGAGAGAGGTTTT
TATTTTTGGGAATTGGACTGGAACAGAAAGAAACTACGTTTGAAATCATTGATTTATCAAGATTTGAAAGGACGACCGAT
TTATCTAACGGAAGAGTTTGACTTCTTTCAAGAAAGTCTCTTAGACCTCTTACGACAGCCCTTTCGAAAAGGAAAAACTC
TGAGTTTAGATGTGCCAAAGCAAGAAGAGTTACAGTTGTTTGTTCAGAAACAATTGTATTATCAAGTGCCAAAATGGCTT
AAAGTGCAAGAAAAATATTATGAACAAGGAAGAAATTTGCTGGACCTTAACTGGAAGAAGAGTTACTGGAGTCCTCCGGG
CTTGAACTTGTTGACCTTTGACTTTGCCGATGATACGCGAGAAAGCTTTTTTCAAGTAGACATTTCCTTGGAAGAATATT
ACCACAGCTTCTACGAAAGTTTTCAGTTACAAGAACATGAAACACTGCATACACCAAGCTTCTATGCTATAATTAAAGAT
AAAAATAAAGTGGAAAACGGAGAATGGAATGGCAAAAAAACGTGA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Lactococcus lactis subsp. cremoris KW2

51.534

97.605

0.503
  coiA Streptococcus pneumoniae Rx1

41.463

98.204

0.407
  coiA Streptococcus pneumoniae D39

41.463

98.204

0.407
  coiA Streptococcus pneumoniae R6

41.463

98.204

0.407
  coiA Streptococcus pneumoniae TIGR4

41.159

98.204

0.404
  coiA Streptococcus mitis NCTC 12261

40.854

98.204

0.401