Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   VNN36_RS01785 Genome accession   NZ_CP141717
Coordinates   347838..349196 (-) Length   452 a.a.
NCBI ID   WP_339013707.1    Uniprot ID   -
Organism   Lactococcus garvieae strain R22-8     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 342838..354196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN36_RS01755 (VNN36_01755) - 343814..344341 (-) 528 WP_014024339.1 F0F1 ATP synthase subunit delta -
  VNN36_RS01760 (VNN36_01760) atpF 344356..344862 (-) 507 WP_339013701.1 F0F1 ATP synthase subunit B -
  VNN36_RS01765 (VNN36_01765) atpB 344876..345589 (-) 714 WP_004259176.1 F0F1 ATP synthase subunit A -
  VNN36_RS01770 (VNN36_01770) - 345644..345859 (-) 216 WP_003135074.1 F0F1 ATP synthase subunit C -
  VNN36_RS01775 (VNN36_01775) - 346055..346831 (-) 777 WP_014024338.1 alpha/beta hydrolase family protein -
  VNN36_RS01780 (VNN36_01780) comEC 346986..347834 (-) 849 WP_339013704.1 ComEC/Rec2 family competence protein Machinery gene
  VNN36_RS01785 (VNN36_01785) comEC 347838..349196 (-) 1359 WP_339013707.1 ComEC/Rec2 family competence protein Machinery gene
  VNN36_RS01790 (VNN36_01790) - 349216..349776 (-) 561 WP_339013710.1 SLBB domain-containing protein -
  VNN36_RS01795 (VNN36_01795) - 349834..351009 (-) 1176 WP_004259189.1 SLC13 family permease -
  VNN36_RS01800 (VNN36_01800) - 351175..352731 (-) 1557 WP_339013713.1 ABC-F family ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 452 a.a.        Molecular weight: 53026.19 Da        Isoelectric Point: 9.8648

>NTDB_id=918746 VNN36_RS01785 WP_339013707.1 347838..349196(-) (comEC) [Lactococcus garvieae strain R22-8]
MKQKFSLIYFVYLLVFVYFLIFSFSWPLLILSLFSFFIAFYRQYYSVLVLLLCFSLFLLMIKKETEVQERKQPEKISKIT
PYMDTLQVNGSRLSFRGEVNGNDFQAFYTLTSEKEKEYFKKLAVKGTFYLEGTLEIPEEQRNFSGFDYRKYLRTQGVYRL
LKIEKIHGFEEKQDFDLRLVRRKAILWAQEHFPSPMSSYMTGLLFGWLDKDFEEMGELYTSLGIIHLFALSGMQVNFFIE
LLRNILLRLGLSQKLVFFIQIPFSIFYAFLTGLSLSILRALLQKNIPLKNSSDRFSVTFLLLMVFSPYFLLTTGGQLTML
YSFLITFFSRKFKELKGLKKSLLDSTVLAVGVLPLLIFHFHSFQPLSIILTLLFSLIFDFLLLPGLLFVFLLSLFGTALM
LFNPFFIVLESIVRWVGDLFDQPIVFGKPNLIFLLFLFMLSGLALDFYKKRN

Nucleotide


Download         Length: 1359 bp        

>NTDB_id=918746 VNN36_RS01785 WP_339013707.1 347838..349196(-) (comEC) [Lactococcus garvieae strain R22-8]
ATGAAACAAAAATTTTCGCTTATCTATTTCGTTTATCTCTTAGTCTTTGTTTATTTTCTTATTTTTAGTTTTTCATGGCC
TTTACTTATTCTTAGTCTCTTTAGTTTCTTCATCGCTTTTTATCGTCAATACTATAGTGTGTTAGTTCTTTTACTGTGCT
TTAGTTTATTCTTACTTATGATAAAAAAAGAAACGGAAGTACAAGAAAGAAAGCAACCAGAAAAAATTTCGAAAATTACC
CCTTATATGGATACTCTTCAAGTAAATGGAAGCAGGCTCAGTTTCAGAGGAGAAGTGAACGGCAACGACTTCCAAGCTTT
TTACACCTTGACCTCGGAAAAAGAAAAAGAATACTTCAAAAAACTTGCGGTGAAGGGGACTTTTTACCTTGAAGGCACTT
TGGAGATTCCAGAAGAGCAAAGAAATTTTTCAGGTTTTGATTACAGGAAGTATTTAAGGACTCAAGGGGTCTATCGTCTT
CTTAAAATAGAAAAAATTCATGGATTTGAAGAAAAACAGGACTTTGATTTACGGCTGGTACGCCGAAAAGCCATTCTTTG
GGCTCAGGAACATTTCCCTTCTCCTATGTCGTCCTATATGACAGGGCTTCTTTTTGGGTGGTTGGATAAAGACTTTGAAG
AAATGGGGGAGCTTTACACCAGCCTTGGTATTATCCATTTATTTGCGCTGTCAGGCATGCAGGTGAATTTTTTTATTGAA
CTTCTCCGAAATATTTTACTGCGGCTTGGCTTATCACAGAAGTTAGTCTTTTTTATCCAAATTCCCTTTTCGATATTTTA
TGCATTTCTTACAGGCTTATCTCTTTCAATCTTACGCGCGCTTCTTCAAAAAAATATCCCCCTTAAAAATTCAAGCGATA
GATTTTCTGTCACTTTTCTTCTTTTAATGGTGTTCAGTCCTTATTTCCTGCTGACAACAGGAGGACAACTCACGATGCTT
TATTCTTTCTTAATCACATTTTTTTCACGAAAGTTCAAAGAACTAAAAGGATTAAAAAAATCGTTACTTGATTCTACCGT
CCTAGCTGTTGGGGTTCTTCCGCTTTTGATTTTTCACTTCCATAGTTTTCAGCCATTATCGATTATCTTGACTTTATTAT
TTAGTCTGATTTTTGATTTTTTACTTCTGCCAGGTTTACTTTTTGTTTTTCTTCTTTCTTTATTCGGTACTGCTCTCATG
TTATTTAATCCTTTTTTTATTGTTTTAGAATCAATAGTAAGATGGGTGGGCGATTTATTTGACCAGCCGATTGTCTTTGG
CAAACCCAACCTTATTTTTTTACTTTTCCTTTTTATGCTGAGTGGACTTGCCCTTGATTTTTATAAAAAAAGAAACTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(203-445)

Domain of unknown function (DUF4131) (DUF4131)

(24-166)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Lactococcus lactis subsp. cremoris KW2

53.111

99.558

0.529
  comEC/celB Streptococcus mitis SK321

44.725

96.46

0.431
  comEC/celB Streptococcus pneumoniae TIGR4

44.009

96.018

0.423
  comEC/celB Streptococcus pneumoniae Rx1

43.779

96.018

0.42
  comEC/celB Streptococcus pneumoniae D39

43.779

96.018

0.42
  comEC/celB Streptococcus pneumoniae R6

43.779

96.018

0.42
  comEC/celB Streptococcus mitis NCTC 12261

43.318

96.018

0.416