Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   VNN36_RS01475 Genome accession   NZ_CP141717
Coordinates   288393..289397 (-) Length   334 a.a.
NCBI ID   WP_339013633.1    Uniprot ID   -
Organism   Lactococcus garvieae strain R22-8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 283393..294397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN36_RS01460 (VNN36_01460) - 284915..285823 (-) 909 WP_339013624.1 foldase -
  VNN36_RS01465 (VNN36_01465) - 285921..286604 (-) 684 WP_339013627.1 O-methyltransferase -
  VNN36_RS01470 (VNN36_01470) pepF 286604..288409 (-) 1806 WP_339013630.1 oligoendopeptidase F Regulator
  VNN36_RS01475 (VNN36_01475) coiA 288393..289397 (-) 1005 WP_339013633.1 competence protein CoiA family protein Machinery gene
  VNN36_RS01480 (VNN36_01480) - 289473..290573 (-) 1101 WP_339013636.1 YdcF family protein -
  VNN36_RS01485 (VNN36_01485) - 290650..292071 (-) 1422 WP_014024380.1 NCS2 family permease -
  VNN36_RS01490 (VNN36_01490) - 292428..293252 (+) 825 WP_014024379.1 Cof-type HAD-IIB family hydrolase -
  VNN36_RS01495 (VNN36_01495) - 293305..294009 (-) 705 WP_004258993.1 Bax inhibitor-1/YccA family protein -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 39905.81 Da        Isoelectric Point: 8.6103

>NTDB_id=918741 VNN36_RS01475 WP_339013633.1 288393..289397(-) (coiA) [Lactococcus garvieae strain R22-8]
MLIALDKDGKTINLLDSTSINGPFYCPACKTALRLKKGKIKIPHFAHVSLQNCDSWSENESAQHLGLKLSLYQWFKEKEK
VELEKYVPEIKQTADLLVNDKLAIEIQCSPLSLQRLEERTVSYKEMGYYVLWLQGRDLWLKNTLSPLQKNLLYYSAERGF
YFWKLDWNRKKLRLKSLIYQDLKGRPIYLTEEFDFFQESLLDLLRQPFRKGKNLSLDVPKQEELQFFVQKQLYYQVPKWL
KVQEKYYEQGRNVLDLNWKKSYWSPPGMNLLTFDFADDTRESFFQVDISLEEYYHSFYESFQLKEHETLHTPSFYAIIKD
KNKVENGEWNGKKT

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=918741 VNN36_RS01475 WP_339013633.1 288393..289397(-) (coiA) [Lactococcus garvieae strain R22-8]
ATGTTAATAGCTTTGGATAAAGACGGAAAAACAATTAATCTTCTTGACAGCACTTCAATTAATGGCCCTTTTTATTGCCC
GGCCTGTAAGACGGCCCTTCGTTTAAAAAAAGGGAAGATAAAAATTCCTCACTTTGCCCATGTATCCTTACAAAATTGTG
ACTCTTGGAGTGAAAATGAATCTGCACAACACTTGGGCTTAAAACTCAGCTTATATCAGTGGTTTAAGGAAAAAGAGAAA
GTAGAGCTGGAAAAGTACGTGCCAGAGATTAAGCAAACGGCTGATTTGTTAGTGAATGATAAACTTGCTATTGAAATACA
GTGCTCGCCCCTCTCTTTGCAACGTTTAGAAGAGAGAACGGTCAGTTACAAAGAAATGGGGTATTATGTACTTTGGCTTC
AAGGGAGGGACTTGTGGCTTAAAAATACTCTATCTCCTTTGCAGAAAAATTTGCTTTATTATTCAGCAGAGAGAGGTTTT
TATTTTTGGAAATTGGACTGGAACAGAAAGAAACTACGTTTGAAATCATTGATTTATCAAGATTTGAAAGGACGACCGAT
TTATCTAACGGAAGAGTTTGACTTCTTTCAAGAAAGTCTCCTAGACCTCTTACGACAGCCCTTTCGAAAAGGAAAAAATC
TGAGTTTAGATGTGCCAAAGCAAGAAGAGTTACAGTTTTTTGTTCAGAAGCAATTGTATTATCAAGTGCCAAAATGGCTT
AAAGTGCAAGAAAAATATTATGAACAAGGAAGAAATGTGCTGGACCTTAACTGGAAGAAGAGTTACTGGAGTCCTCCGGG
CATGAACTTGTTGACCTTTGACTTTGCTGATGATACGCGAGAAAGCTTTTTTCAAGTAGACATTTCCTTGGAAGAATATT
ACCACAGCTTCTACGAAAGTTTTCAGTTAAAAGAACATGAAACACTGCATACACCAAGCTTCTATGCTATAATTAAAGAT
AAAAATAAAGTGGAAAACGGAGAATGGAATGGCAAAAAAACGTGA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Lactococcus lactis subsp. cremoris KW2

50.92

97.605

0.497
  coiA Streptococcus pneumoniae Rx1

41.159

98.204

0.404
  coiA Streptococcus pneumoniae D39

41.159

98.204

0.404
  coiA Streptococcus pneumoniae R6

41.159

98.204

0.404
  coiA Streptococcus pneumoniae TIGR4

40.854

98.204

0.401
  coiA Streptococcus mitis NCTC 12261

40.244

98.204

0.395